Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B4U39_RS36125 Genome accession   NZ_CP020039
Coordinates   7919609..7920289 (-) Length   226 a.a.
NCBI ID   WP_030384870.1    Uniprot ID   A0ABQ3T4E8
Organism   Streptomyces sp. 3211 isolate 3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7914609..7925289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U39_RS43760 - 7914666..7916522 (-) 1857 WP_203349297.1 GNAT family N-acetyltransferase -
  B4U39_RS36110 - 7916618..7917040 (+) 423 WP_030384867.1 DUF350 domain-containing protein -
  B4U39_RS36115 - 7917119..7918351 (-) 1233 WP_079407430.1 acyltransferase -
  B4U39_RS36120 - 7918348..7919415 (-) 1068 WP_079407431.1 alpha/beta hydrolase -
  B4U39_RS36125 vraR 7919609..7920289 (-) 681 WP_030384870.1 response regulator transcription factor Regulator
  B4U39_RS36130 - 7920286..7921566 (-) 1281 WP_237297183.1 histidine kinase -
  B4U39_RS36135 - 7921681..7922643 (+) 963 WP_237296959.1 AEC family transporter -
  B4U39_RS36140 - 7922640..7923212 (+) 573 WP_053175878.1 HXXEE domain-containing protein -
  B4U39_RS36145 - 7923265..7923660 (+) 396 WP_079407435.1 hypothetical protein -
  B4U39_RS45565 - 7923611..7924984 (-) 1374 WP_079407436.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24334.17 Da        Isoelectric Point: 5.7044

>NTDB_id=184173 B4U39_RS36125 WP_030384870.1 7919609..7920289(-) (vraR) [Streptomyces sp. 3211 isolate 3]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRSTHPDVVLMDVRMPEMDGLTAAREILDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLKGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=184173 B4U39_RS36125 WP_030384870.1 7919609..7920289(-) (vraR) [Streptomyces sp. 3211 isolate 3]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGGTTCGCCGCGCTGCTGTCGGCGCAGGCCGA
CATCGATGTGGTGGGCGAGGCCCCCGACGGGCGCCAGGGGGTTCAGGTGTCCCGCTCCACGCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTGACGGCCGCCCGCGAGATCCTCGATCCCCCGCCCGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGGGCCTCCGGTTTCCT
CCTCAAGGACGCCCCGCCGGCCGATCTGATCGCGGCGGTCCGGGTCGTCGCCTCGGGTGAGGCCCTGCTGGCGCCCTCGG
TGACGCGGCGGCTGATCGCGGACTTCGTCCAGCAGCGGCCGGCGCCGCGCAAGGATCCCGCGCTGCGGCTCAAGGGGCTC
ACGCCGCGCGAGACCGAGGTGCTGGAGCTCATCGCGCGCGGCCTGTCGAACCAGGAGATCGCGGGCCACCTGGTGCTGGC
GGAGCAGACGGTGAAGACGCACATCGGCCGGGTGCTGGCCAAGCTCGACCTGCGGGACCGGGCCCAAGCGGTGATCTTCG
CGTACGAGGCGGGGCTGGTGCGGCCGGGGGACTCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.081

97.788

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

37.004

100

0.372

Multiple sequence alignment