Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Vp2S01_RS15850 Genome accession   NZ_CP020034
Coordinates   3098586..3099059 (+) Length   157 a.a.
NCBI ID   WP_053317965.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3093586..3104059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS15820 (Vp2S01_2863) cytR 3093618..3094664 (+) 1047 WP_254894148.1 DNA-binding transcriptional regulator CytR Regulator
  Vp2S01_RS15825 (Vp2S01_2864) ftsN 3094841..3095386 (+) 546 WP_005481405.1 cell division protein FtsN -
  Vp2S01_RS15830 (Vp2S01_2865) hslV 3095551..3096102 (+) 552 WP_108744571.1 ATP-dependent protease subunit HslV -
  Vp2S01_RS15835 (Vp2S01_2866) hslU 3096126..3097457 (+) 1332 WP_108744572.1 HslU--HslV peptidase ATPase subunit -
  Vp2S01_RS15840 (Vp2S01_2867) - 3097882..3098106 (-) 225 WP_029864913.1 hypothetical protein -
  Vp2S01_RS15845 (Vp2S01_2868) - 3098266..3098436 (-) 171 WP_257791499.1 AlpA family transcriptional regulator -
  Vp2S01_RS15850 (Vp2S01_2869) radC 3098586..3099059 (+) 474 WP_053317965.1 DNA repair protein RadC Machinery gene
  Vp2S01_RS15855 (Vp2S01_2870) - 3099056..3099487 (+) 432 WP_029864910.1 DUF2787 family protein -
  Vp2S01_RS15860 (Vp2S01_2871) - 3099602..3100426 (+) 825 WP_053317964.1 WYL domain-containing protein -
  Vp2S01_RS15865 (Vp2S01_2872) - 3100423..3101586 (+) 1164 WP_108744574.1 hypothetical protein -
  Vp2S01_RS15870 (Vp2S01_2873) - 3101953..3102609 (-) 657 WP_021451684.1 inovirus Gp2 family protein -
  Vp2S01_RS15875 (Vp2S01_2874) - 3102970..3103800 (+) 831 WP_228770439.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17589.05 Da        Isoelectric Point: 7.2351

>NTDB_id=184083 Vp2S01_RS15850 WP_053317965.1 3098586..3099059(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASAEHEVFALLLLDSQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=184083 Vp2S01_RS15850 WP_053317965.1 3098586..3099059(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTCCGATTCAAACTAGCCAGCG
CTGAACACGAGGTTTTCGCTCTGCTACTGCTTGATAGCCAACACCGTGTCATCGAATTTAAATCACTCTTTAAAGGCACC
ATTGATTCCGCTAGCGTTTATCCTCGCGAGGTCGTCAAAAGCGTTTTGGAAGTGAATGCAGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCCGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTCATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTCGGAGAAAGCAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.445

87.261

0.414

Multiple sequence alignment