Detailed information NTG0184082

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Vp2S01_RS15820
• Genome accession: NZ_CP020034
• Coordinates: 3093618..3094664 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20130629002S01
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3088618..3099664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vp2S01_RS15795 (Vp2S01_2859)	rplC	3089191..3089820 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
Vp2S01_RS15800 (Vp2S01_2860)	rpsJ	3089835..3090146 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
Vp2S01_RS15805 (Vp2S01_2861)	rpmE	3090604..3090825 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
Vp2S01_RS15815 (Vp2S01_2862)	priA	3091120..3093324 (+)	2205	WP_108744570.1	primosomal protein N'	Machinery gene
Vp2S01_RS15820 (Vp2S01_2863)	cytR	3093618..3094664 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
Vp2S01_RS15825 (Vp2S01_2864)	ftsN	3094841..3095386 (+)	546	WP_005481405.1	cell division protein FtsN	-
Vp2S01_RS15830 (Vp2S01_2865)	hslV	3095551..3096102 (+)	552	WP_108744571.1	ATP-dependent protease subunit HslV	-
Vp2S01_RS15835 (Vp2S01_2866)	hslU	3096126..3097457 (+)	1332	WP_108744572.1	HslU--HslV peptidase ATPase subunit	-
Vp2S01_RS15840 (Vp2S01_2867)	-	3097882..3098106 (-)	225	WP_029864913.1	hypothetical protein	-
Vp2S01_RS15845 (Vp2S01_2868)	-	3098266..3098436 (-)	171	WP_257791499.1	AlpA family transcriptional regulator	-
Vp2S01_RS15850 (Vp2S01_2869)	radC	3098586..3099059 (+)	474	WP_053317965.1	DNA repair protein RadC	Machinery gene
Vp2S01_RS15855 (Vp2S01_2870)	-	3099056..3099487 (+)	432	WP_029864910.1	DUF2787 family protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=184082 Vp2S01_RS15820 WP_254894148.1 3093618..3094664(+) (cytR) [Vibrio parahaemolyticus strain 20130629002S01]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=184082 Vp2S01_RS15820 WP_254894148.1 3093618..3094664(+) (cytR) [Vibrio parahaemolyticus strain 20130629002S01]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTACACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTGTTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCTGTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871