Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Vp2S01_RS16265 Genome accession   NZ_CP020034
Coordinates   3177845..3178318 (+) Length   157 a.a.
NCBI ID   WP_108744590.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3172845..3183318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS16245 (Vp2S01_2948) - 3173228..3174241 (-) 1014 WP_025792494.1 response regulator transcription factor -
  Vp2S01_RS16250 (Vp2S01_2949) - 3174243..3176717 (-) 2475 WP_025792492.1 ATP-binding protein -
  Vp2S01_RS16255 - 3176728..3177147 (-) 420 WP_025792490.1 hypothetical protein -
  Vp2S01_RS16260 - 3177151..3177525 (-) 375 WP_025792488.1 hypothetical protein -
  Vp2S01_RS16265 (Vp2S01_2951) radC 3177845..3178318 (+) 474 WP_108744590.1 DNA repair protein RadC Machinery gene
  Vp2S01_RS16270 (Vp2S01_2952) - 3178315..3178752 (+) 438 WP_168192488.1 DUF2787 domain-containing protein -
  Vp2S01_RS16275 (Vp2S01_2953) - 3178803..3179246 (+) 444 WP_108744592.1 DUF2787 domain-containing protein -
  Vp2S01_RS16285 (Vp2S01_2954) - 3179565..3180299 (+) 735 WP_108744594.1 transcriptional regulator -
  Vp2S01_RS16290 (Vp2S01_2955) - 3180330..3180698 (+) 369 WP_108744595.1 hypothetical protein -
  Vp2S01_RS16295 (Vp2S01_2956) - 3180746..3180973 (+) 228 WP_108744596.1 hypothetical protein -
  Vp2S01_RS16300 tnpA 3181059..3181483 (-) 425 Protein_2830 IS200/IS605 family transposase -
  Vp2S01_RS16305 (Vp2S01_2957) - 3181690..3181941 (-) 252 WP_024700454.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17744.94 Da        Isoelectric Point: 5.8644

>NTDB_id=184085 Vp2S01_RS16265 WP_108744590.1 3177845..3178318(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
MNPKTSDYQKQQHYQENEILEHAAEILATRYVRGDALTNPDATKEYVRCKLGSHEREVFALLLLDNQNRLIEFKELFHGT
VDAASVYPREVVKTVLEVNAAAVIFAHNHPSGDSTPSQADRRITERLKDALALVDVRVLDHIVTGDTCTSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=184085 Vp2S01_RS16265 WP_108744590.1 3177845..3178318(+) (radC) [Vibrio parahaemolyticus strain 20130629002S01]
ATGAATCCCAAAACGTCCGATTACCAAAAGCAGCAACACTATCAGGAAAATGAAATCCTAGAGCATGCCGCAGAGATACT
GGCAACACGATACGTGCGTGGTGATGCTCTCACCAATCCTGATGCCACCAAAGAGTATGTGCGCTGTAAGCTAGGTAGCC
ATGAGCGTGAAGTCTTTGCCTTATTGCTACTGGATAACCAAAACCGACTGATTGAATTTAAAGAGCTGTTTCATGGCACC
GTAGATGCGGCCAGCGTCTATCCACGTGAAGTGGTGAAAACGGTGTTAGAAGTGAATGCCGCAGCGGTGATATTTGCCCA
TAACCATCCATCTGGAGACTCAACACCGTCTCAAGCCGATAGACGCATAACCGAAAGACTCAAGGACGCTTTAGCGCTGG
TGGATGTTCGCGTTCTCGACCATATCGTGACAGGCGATACCTGCACCTCATTTGCTGAAAGGGGATGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.985

87.261

0.401

Multiple sequence alignment