Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Vp2S01_RS14445 Genome accession   NZ_CP020034
Coordinates   2813227..2813955 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2808227..2818955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS14430 (Vp2S01_2602) clpC 2808662..2811235 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  Vp2S01_RS14435 (Vp2S01_2603) pgeF 2811383..2812111 (-) 729 WP_005477884.1 peptidoglycan editing factor PgeF -
  Vp2S01_RS14440 (Vp2S01_2604) rluD 2812113..2813090 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Vp2S01_RS14445 (Vp2S01_2605) comL 2813227..2813955 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  Vp2S01_RS14450 (Vp2S01_2606) - 2814090..2815571 (+) 1482 WP_025507089.1 lytic transglycosylase F -
  Vp2S01_RS14455 (Vp2S01_2607) raiA 2815902..2816228 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  Vp2S01_RS14460 (Vp2S01_2608) pheA 2816472..2817650 (+) 1179 WP_005468591.1 prephenate dehydratase -
  Vp2S01_RS14465 (Vp2S01_2609) yjjX 2817675..2818208 (+) 534 WP_023585665.1 inosine/xanthosine triphosphatase -
  Vp2S01_RS14470 (Vp2S01_2610) trpR 2818257..2818568 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=184078 Vp2S01_RS14445 WP_005460312.1 2813227..2813955(+) (comL) [Vibrio parahaemolyticus strain 20130629002S01]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=184078 Vp2S01_RS14445 WP_005460312.1 2813227..2813955(+) (comL) [Vibrio parahaemolyticus strain 20130629002S01]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGCAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAACTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCGTGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment