Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   B4W66_RS07125 Genome accession   NZ_CP020027
Coordinates   1388815..1389849 (-) Length   344 a.a.
NCBI ID   WP_023610531.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB090229     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1383815..1394849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W66_RS07090 (B4W66_07095) - 1384591..1384893 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  B4W66_RS07095 (B4W66_07100) rnpM 1384886..1385182 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  B4W66_RS07100 (B4W66_07105) nusA 1385198..1386355 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  B4W66_RS07105 (B4W66_07110) rimP 1386530..1387066 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  B4W66_RS07115 (B4W66_07120) trmB 1387325..1387960 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  B4W66_RS07120 (B4W66_07125) ccrZ 1387960..1388751 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  B4W66_RS07125 (B4W66_07130) pptB 1388815..1389849 (-) 1035 WP_023610531.1 ABC transporter permease Regulator
  B4W66_RS07130 (B4W66_07135) pptA 1389852..1390577 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  B4W66_RS07135 (B4W66_07140) - 1390649..1391068 (+) 420 WP_011285081.1 HIT family protein -
  B4W66_RS07140 (B4W66_07145) - 1391065..1391421 (+) 357 WP_020905404.1 hypothetical protein -
  B4W66_RS07145 (B4W66_07150) brpA 1391532..1392806 (-) 1275 WP_020837594.1 biofilm formation/cell division transcriptional regulator BrpA -
  B4W66_RS07150 (B4W66_07155) - 1392815..1393339 (-) 525 WP_030126880.1 GNAT family N-acetyltransferase -
  B4W66_RS07155 (B4W66_07160) tsaE 1393314..1393775 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40256.48 Da        Isoelectric Point: 10.3713

>NTDB_id=183979 B4W66_RS07125 WP_023610531.1 1388815..1389849(-) (pptB) [Streptococcus pyogenes strain STAB090229]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=183979 B4W66_RS07125 WP_023610531.1 1388815..1389849(-) (pptB) [Streptococcus pyogenes strain STAB090229]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433

  pptB Streptococcus salivarius strain HSISS4

43.023

100

0.43


Multiple sequence alignment