Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   A9E77_RS13540 Genome accession   NZ_CP015932
Coordinates   3052293..3052952 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain C1_S     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047293..3057952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E77_RS13525 (A9E77_13525) - 3048327..3048986 (+) 660 WP_011947560.1 hypothetical protein -
  A9E77_RS13530 (A9E77_13530) - 3049154..3050401 (+) 1248 WP_040185895.1 DUF1566 domain-containing protein -
  A9E77_RS13535 (A9E77_13535) uvrC 3050425..3052281 (-) 1857 WP_011947562.1 excinuclease ABC subunit UvrC -
  A9E77_RS13540 (A9E77_13540) letA 3052293..3052952 (-) 660 WP_011947563.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  A9E77_RS13545 (A9E77_13545) phhA 3053077..3053895 (-) 819 WP_011947564.1 phenylalanine 4-monooxygenase -
  A9E77_RS13550 (A9E77_13550) - 3054334..3055431 (+) 1098 WP_011947565.1 competence/damage-inducible protein A -
  A9E77_RS13555 (A9E77_13555) cgtA 3055390..3056415 (-) 1026 WP_011947566.1 Obg family GTPase CgtA -
  A9E77_RS13560 (A9E77_13560) rpmA 3056630..3056908 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  A9E77_RS13565 (A9E77_13565) rplU 3056921..3057232 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=183942 A9E77_RS13540 WP_011947563.1 3052293..3052952(-) (letA) [Legionella pneumophila strain C1_S]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=183942 A9E77_RS13540 WP_011947563.1 3052293..3052952(-) (letA) [Legionella pneumophila strain C1_S]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTGTTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment