Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS21228_RS17530 Genome accession   NZ_CP020023
Coordinates   3289139..3289786 (+) Length   215 a.a.
NCBI ID   WP_014479290.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 21228     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3284139..3294786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS21228_RS17515 (BS21228_17450) glpD 3284310..3285977 (+) 1668 WP_014479287.1 glycerol-3-phosphate dehydrogenase -
  BS21228_RS17520 (BS21228_17455) pgcA 3286109..3287854 (+) 1746 WP_014479288.1 phosphoglucomutase -
  BS21228_RS17525 (BS21228_17460) yhcY 3288003..3289142 (+) 1140 WP_014479289.1 two-component system sensor histidine kinase YhcY -
  BS21228_RS17530 (BS21228_17465) vraR 3289139..3289786 (+) 648 WP_014479290.1 two-component system response regulator YhcZ Regulator
  BS21228_RS17535 (BS21228_17470) yhdA 3289783..3290307 (+) 525 WP_014479291.1 FMN-dependent NADPH-azoreductase -
  BS21228_RS17540 (BS21228_17475) yhdB 3290322..3290564 (-) 243 WP_003233373.1 YhdB family protein -
  BS21228_RS17545 (BS21228_17480) yhdC 3290765..3291088 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  BS21228_RS17550 (BS21228_17485) lytF 3291130..3292590 (-) 1461 WP_014479292.1 peptidoglycan endopeptidase LytF -
  BS21228_RS17555 (BS21228_17490) nsrR 3292744..3293184 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24135.75 Da        Isoelectric Point: 6.3034

>NTDB_id=183785 BS21228_RS17530 WP_014479290.1 3289139..3289786(+) (vraR) [Bacillus subtilis strain ATCC 21228]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=183785 BS21228_RS17530 WP_014479290.1 3289139..3289786(+) (vraR) [Bacillus subtilis strain ATCC 21228]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409

Multiple sequence alignment