Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLUC109_RS10665 Genome accession   NZ_CP015907
Coordinates   2093453..2093944 (-) Length   163 a.a.
NCBI ID   WP_015082943.1    Uniprot ID   A0A166XX03
Organism   Lactococcus cremoris strain UC109     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2092736..2093590 2093453..2093944 flank -137


Gene organization within MGE regions


Location: 2092736..2093944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC109_RS10665 (LLUC109_2144) comX 2093453..2093944 (-) 492 WP_015082943.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19661.45 Da        Isoelectric Point: 6.0256

>NTDB_id=183345 LLUC109_RS10665 WP_015082943.1 2093453..2093944(-) (comX) [Lactococcus cremoris strain UC109]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMECYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=183345 LLUC109_RS10665 WP_015082943.1 2093453..2093944(-) (comX) [Lactococcus cremoris strain UC109]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAACCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAATGCTATCGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166XX03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.773

100

0.988
  comX Lactococcus lactis subsp. lactis strain DGCC12653

75.46

100

0.755

Multiple sequence alignment