Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLUC06_RS12200 Genome accession   NZ_CP015902
Coordinates   2435417..2435866 (-) Length   149 a.a.
NCBI ID   WP_237025672.1    Uniprot ID   A0A1V0P5B2
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430417..2440866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS12200 (LLUC06_2369) comX 2435417..2435866 (-) 450 WP_237025672.1 sigma-70 family RNA polymerase sigma factor Regulator
  LLUC06_RS12205 (LLUC06_2370) ezrA 2436123..2437853 (-) 1731 WP_058203258.1 septation ring formation regulator EzrA -
  LLUC06_RS12210 (LLUC06_2371) tsf 2438058..2439086 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  LLUC06_RS12215 (LLUC06_2372) rpsB 2439208..2439975 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17884.43 Da        Isoelectric Point: 5.5684

>NTDB_id=183101 LLUC06_RS12200 WP_237025672.1 2435417..2435866(-) (comX) [Lactococcus lactis subsp. lactis strain UC06]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQVSPS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=183101 LLUC06_RS12200 WP_237025672.1 2435417..2435866(-) (comX) [Lactococcus lactis subsp. lactis strain UC06]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAAGTATCGCCTTCGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0P5B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

99.31

97.315

0.966
  comX Lactococcus lactis subsp. cremoris KW2

75.862

97.315

0.738

Multiple sequence alignment