Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   AT729_RS01575 Genome accession   NZ_CP015886
Coordinates   264222..264902 (+) Length   226 a.a.
NCBI ID   WP_079889338.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259222..269902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS01555 (AT729_00267) trpC 260303..261085 (-) 783 WP_079889336.1 indole-3-glycerol phosphate synthase TrpC -
  AT729_RS01560 (AT729_00268) - 261136..262092 (-) 957 WP_079889337.1 YheT family hydrolase -
  AT729_RS01565 (AT729_00269) murJ 262225..263763 (-) 1539 WP_002226012.1 murein biosynthesis integral membrane protein MurJ -
  AT729_RS14535 - 263821..263928 (+) 108 Protein_265 IS5/IS1182 family transposase -
  AT729_RS01575 (AT729_00270) dsbA1 264222..264902 (+) 681 WP_079889338.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  AT729_RS01580 (AT729_00271) amgK 264959..265963 (-) 1005 WP_002239466.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  AT729_RS01585 (AT729_00272) - 266033..268441 (+) 2409 WP_195182869.1 LPS-assembly protein LptD -
  AT729_RS01590 (AT729_00273) - 268546..269625 (+) 1080 WP_195182872.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24674.12 Da        Isoelectric Point: 5.3490

>NTDB_id=182771 AT729_RS01575 WP_079889338.1 264222..264902(+) (dsbA1) [Neisseria meningitidis strain 38277]
MKSRHLALGVAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLS
KHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTAFDGKKV
LAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 681 bp        

>NTDB_id=182771 AT729_RS01575 WP_079889338.1 264222..264902(+) (dsbA1) [Neisseria meningitidis strain 38277]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGTCCCCGCCGACAGCGCGCC
TGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTGCCAACCCGATTCCCCAAC
AGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCACCTCGAACCTGTTTTGAGC
AAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAGCATGTCGTTTGGCAAAAAGAAATGCTGCCGCTGGC
ACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATATTTTCGATGCGATGGTCA
ACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCCTTTGACGGCAAAAAAGTC
CTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGAAACCTTCCAAATCGACGG
TACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTATGAACACCATCGACCTTT
TGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(57-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

96.552

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.72

83.628

0.642

Multiple sequence alignment