Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AT729_RS00285 Genome accession   NZ_CP015886
Coordinates   43588..46728 (+) Length   1046 a.a.
NCBI ID   WP_079889315.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 38588..51728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS00260 (AT729_00045) - 39423..39908 (+) 486 WP_002215245.1 CinA family protein -
  AT729_RS00265 (AT729_00046) msrAB 40010..41578 (-) 1569 WP_002216163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  AT729_RS00275 (AT729_00047) pilA 41723..42988 (+) 1266 WP_002215249.1 signal recognition particle-docking protein FtsY Machinery gene
  AT729_RS13060 - 43465..43659 (-) 195 WP_025461142.1 hypothetical protein -
  AT729_RS00285 (AT729_00048) pilC 43588..46728 (+) 3141 WP_079889315.1 PilC family type IV pilus tip adhesin Machinery gene
  AT729_RS00305 (AT729_00049) yccS 47706..49856 (-) 2151 WP_025460119.1 YccS family putative transporter -
  AT729_RS00310 (AT729_00050) - 50142..51368 (-) 1227 WP_002218483.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 1046 a.a.        Molecular weight: 114811.59 Da        Isoelectric Point: 9.7011

>NTDB_id=182768 AT729_RS00285 WP_079889315.1 43588..46728(+) (pilC) [Neisseria meningitidis strain 38277]
MNKTWKRQVFRHTALYTAILMFSHTGGGGAQAQTQTYSYALVMNGQQLPEVKWGNSYNQLTHKNNTRQATFHSYFQGARK
KTTFSFNNTDEVVAQKGDTVVFGAATYLPPYGKVSGFDERKLKERTNALNWINTTRPGLVGYHYQDSTCSSGNCPELSYK
TQFTFGHSSLAKKTNGGKLDIYEDKSRDGSPIYKLQGYSWLGVSFNLSGESTAESKKLKNLVSSFSEEVTQNNGADSQHK
DKNLVYTTGDGRNNKTHQDKHHAVAFYLNAKLHLLDKQQIKNITQGSELNLGVLKTRIEPTDAWKNKRHLVINADWEFKD
TGIVSVKLKLPEVKAGRCINKQNPNPKSQAPSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSRIFLQNLKRKDDPN
KPGRHSLEPLNDTQIKSKEPTFTGRQTIIRLDDGVREIKLDKSNEVTGLNGNDGKNDTFGIVSEGSFTPDVSEWKKVLLP
WTVRGSADDGRFKSINQESSKYSQRYRIRENGNNSKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKNGGSDERSYNLK
LSYIPGTMPRKDIENKDSTLAKELRAFAEKGYVGDRYGVDGGFVLRKVERNGKDHVFMFGAMGFGGRGAYALDLSKIDSG
NGNLADVSLFDVKHDKNGNNGVKLGYTVGTPQIGKTHNGKYAAFLASGYATKDINNGENKTALYVYDLENNNGTPIAKIE
VPNGKGGLSSPTLVDKDLDGTIDIAYAGDRGGNMYRFDLSSDNPSSWTVRTIFQGTKPITSAPAISQLKDKRVVIFGTGS
DLSEDDVLSTSEQYIYGIFDDDTATTGSVNFSGLGGGLLEQELKQEGKTLFLTDYKRSDGSGNKGWVVKLKDGQRVTVKP
TVVLRTAFVTIHKYTGTDKCGAETAILGINTADGGKLTKKSARPIVPEANQAVAQYSGHKQTAKGKSIPIGCMQKGNEIV
CPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPDGKRSGKNNRCFSQKGVRTLLMNDLDSLDITGPTCGMKRIS
WREVFF

Nucleotide


Download         Length: 3141 bp        

>NTDB_id=182768 AT729_RS00285 WP_079889315.1 43588..46728(+) (pilC) [Neisseria meningitidis strain 38277]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGCAAGCGCAAACGCAAACGTATTCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGG
GGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAGCTAGAAAA
AAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAGGCGATACTGTCGTTTTCGGCGCGGCGACCTA
CCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGAAAGAAAGCTGAAAGAGCGCACCAATGCCCTTAATTGGATTAATA
CGACTCGCCCGGGGTTGGTAGGCTACCACTACCAAGATAGCACATGCTCCAGCGGAAACTGTCCTGAACTTAGCTATAAA
ACCCAATTTACCTTCGGTCATTCCAGTTTGGCAAAAAAGACAAACGGCGGCAAGCTGGATATATACGAAGACAAAAGCCG
CGACGGTTCGCCCATTTACAAATTGCAAGGTTATTCTTGGTTGGGCGTGTCTTTCAATTTGAGCGGCGAAAGCACCGCCG
AATCAAAGAAACTCAAGAACTTGGTATCTTCTTTTAGCGAGGAAGTAACGCAGAACAATGGTGCGGACAGCCAACACAAA
GACAAAAACCTCGTCTATACGACAGGCGATGGCCGTAATAATAAAACCCATCAGGACAAACACCACGCCGTCGCCTTTTA
TCTGAACGCCAAACTGCACCTGCTGGATAAACAACAAATCAAAAATATCACGCAAGGCAGTGAACTTAATTTGGGTGTCT
TGAAAACGCGCATCGAGCCGACGGACGCGTGGAAGAATAAGAGACATCTCGTTATTAATGCTGATTGGGAGTTTAAAGAT
ACCGGAATAGTCAGCGTCAAACTCAAATTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACAAACAGAACCCAAATCCCAA
ATCCCAAGCCCCTTCCCCCGCACTGACTGCCCCCGCGCTGTGGTTCGGACCTGTGCAAAATGGTAAGGTGCAGATGTATT
CCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTTCAAAATCTGAAAAGAAAAGACGACCCCAAC
AAACCCGGCCGCCATTCCCTCGAACCCTTGAATGATACGCAGATTAAAAGTAAAGAGCCGACTTTCACAGGGCGGCAAAC
AATCATCCGATTGGATGACGGCGTACGTGAGATCAAACTGGATAAAAGCAATGAGGTCACCGGTTTAAATGGAAATGACG
GCAAAAACGACACTTTCGGCATTGTTAGTGAAGGGAGCTTCACGCCTGATGTCAGCGAGTGGAAAAAAGTGCTGCTGCCT
TGGACGGTTCGGGGTTCTGCTGATGACGGTCGATTTAAATCAATTAACCAAGAATCAAGCAAATACAGCCAAAGATACCG
CATCCGCGAAAACGGCAACAATAGCAAGCGTGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTCGGCGAATATC
TAGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAG
CTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATTGAAAACAAAGACTCCACCCTCGCCAAAGAGCTGCGCGCCTT
TGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAAAGTCGAACGGAACGGGAAAG
ACCATGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCGGC
AACGGCAACCTGGCAGACGTTTCCCTGTTTGATGTCAAACATGACAAGAATGGCAATAACGGCGTGAAATTAGGCTACAC
CGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGACTAAAGACA
TTAACAACGGCGAGAATAAAACCGCGCTGTATGTGTATGATTTGGAAAACAACAACGGTACGCCGATTGCAAAAATCGAA
GTACCCAACGGCAAGGGCGGGCTTTCGTCCCCCACGTTGGTGGATAAAGATTTGGACGGCACGATCGATATCGCCTATGC
CGGCGATCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGACAATCCGTCCAGCTGGACTGTACGCACTATTTTCC
AAGGCACGAAGCCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTTATCTTCGGCACGGGCAGT
GATTTGAGTGAGGATGATGTACTCAGTACGAGCGAACAATATATTTACGGTATCTTCGACGACGATACGGCGACGACGGG
TAGTGTAAACTTCAGCGGTTTGGGAGGCGGGCTGCTCGAGCAAGAGCTTAAGCAGGAGGGTAAAACCTTATTCCTGACCG
ATTATAAGCGATCCGACGGCTCGGGCAATAAGGGCTGGGTAGTGAAATTGAAGGACGGACAGCGCGTTACCGTCAAACCG
ACCGTGGTATTGCGTACCGCCTTTGTAACCATCCATAAATATACGGGTACGGACAAATGCGGCGCGGAAACCGCCATTTT
GGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGAAGCCAATCAGGCTGTCG
CGCAATATTCCGGCCATAAGCAAACCGCCAAAGGCAAATCCATCCCTATAGGTTGTATGCAAAAAGGCAATGAAATCGTC
TGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAAGAAAACAGACGGATTTTCAACAAC
GGCAGACGGTGATGCGGGCGGCAGCGGTATAGACCCCGACGGCAAGCGTTCCGGCAAAAACAACCGCTGCTTCTCCCAAA
AAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGGTATGAAACGAATCAGC
TGGCGTGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(519-853)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.092

100

0.722

Multiple sequence alignment