Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B4W62_RS03665 Genome accession   NZ_CP019977
Coordinates   726784..727332 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain aerotolerant OR12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 721784..732332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS03635 ctsT 721826..722131 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  B4W62_RS03640 proC 722128..722865 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  B4W62_RS03645 fliW 722865..723254 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  B4W62_RS03650 - 723418..724065 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  B4W62_RS03655 lon 724081..726456 (+) 2376 WP_002777089.1 endopeptidase La -
  B4W62_RS03660 rpsR 726513..726773 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  B4W62_RS03665 ssb 726784..727332 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  B4W62_RS03670 rpsF 727341..727718 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  B4W62_RS03675 - 727998..729269 (+) 1272 WP_002777080.1 MFS transporter -
  B4W62_RS03680 - 729269..730270 (+) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase family protein -
  B4W62_RS11005 - 730263..730904 (-) 642 Protein_716 DUF535 family protein -
  B4W62_RS11490 - 730868..731119 (-) 252 WP_048813181.1 hypothetical protein -
  B4W62_RS03700 rseP 731116..732219 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=182701 B4W62_RS03665 WP_002777084.1 726784..727332(-) (ssb) [Campylobacter coli strain aerotolerant OR12]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=182701 B4W62_RS03665 WP_002777084.1 726784..727332(-) (ssb) [Campylobacter coli strain aerotolerant OR12]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATTGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment