Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A9C11_RS09625 Genome accession   NZ_CP015878
Coordinates   2153041..2153676 (+) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148041..2158676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS09610 (A9C11_09605) - 2148622..2149707 (+) 1086 WP_082936710.1 IS110 family transposase -
  A9C11_RS09615 (A9C11_09610) - 2150094..2150624 (-) 531 WP_064582526.1 DUF2062 domain-containing protein -
  A9C11_RS09620 (A9C11_09615) comA 2150761..2152968 (+) 2208 WP_208858274.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A9C11_RS09625 (A9C11_09620) exbB 2153041..2153676 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A9C11_RS09630 (A9C11_09625) - 2153673..2154119 (+) 447 WP_058071023.1 ExbD/TolR family protein -
  A9C11_RS09635 (A9C11_09630) lpxK 2154119..2155117 (+) 999 WP_064582528.1 tetraacyldisaccharide 4'-kinase -
  A9C11_RS09640 (A9C11_09635) - 2155158..2155343 (+) 186 WP_009621404.1 Trm112 family protein -
  A9C11_RS09645 (A9C11_09640) kdsB 2155364..2156128 (+) 765 WP_058488932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A9C11_RS09650 (A9C11_09645) - 2156128..2156589 (+) 462 WP_043316169.1 low molecular weight protein-tyrosine-phosphatase -
  A9C11_RS09655 (A9C11_09650) murB 2156586..2157605 (+) 1020 WP_064582529.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=182701 A9C11_RS09625 WP_009621398.1 2153041..2153676(+) (exbB) [Pseudomonas citronellolis strain SJTE-3]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=182701 A9C11_RS09625 WP_009621398.1 2153041..2153676(+) (exbB) [Pseudomonas citronellolis strain SJTE-3]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAATGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment