Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   B4W62_RS03635 Genome accession   NZ_CP019977
Coordinates   721826..722131 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain aerotolerant OR12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716826..727131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS03600 - 717241..718002 (+) 762 WP_025431509.1 ATP-binding protein -
  B4W62_RS03605 - 717999..718682 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  B4W62_RS03610 thiD 718682..719494 (+) 813 WP_002797568.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B4W62_RS03615 thiE 719484..720116 (+) 633 WP_002834515.1 thiamine phosphate synthase -
  B4W62_RS03620 - 720094..720723 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  B4W62_RS03625 - 720716..721168 (-) 453 WP_002777117.1 hypothetical protein -
  B4W62_RS03630 - 721165..721833 (-) 669 WP_002790524.1 hypothetical protein -
  B4W62_RS03635 ctsT 721826..722131 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  B4W62_RS03640 proC 722128..722865 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  B4W62_RS03645 fliW 722865..723254 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  B4W62_RS03650 - 723418..724065 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  B4W62_RS03655 lon 724081..726456 (+) 2376 WP_002777089.1 endopeptidase La -
  B4W62_RS03660 rpsR 726513..726773 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=182699 B4W62_RS03635 WP_002790525.1 721826..722131(-) (ctsT) [Campylobacter coli strain aerotolerant OR12]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=182699 B4W62_RS03635 WP_002790525.1 721826..722131(-) (ctsT) [Campylobacter coli strain aerotolerant OR12]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475