Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   A8140_RS12990 Genome accession   NZ_CP015863
Coordinates   2724362..2724979 (+) Length   205 a.a.
NCBI ID   WP_005531723.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719362..2729979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS12970 (A8140_12335) - 2719645..2720562 (-) 918 WP_005531730.1 ABC transporter ATP-binding protein -
  A8140_RS12975 (A8140_12340) - 2720802..2722472 (-) 1671 WP_005531729.1 SulP family inorganic anion transporter -
  A8140_RS12980 (A8140_12345) can 2722755..2723423 (+) 669 WP_005531727.1 carbonate dehydratase -
  A8140_RS12985 (A8140_12350) hpt 2723510..2724040 (-) 531 WP_005531725.1 hypoxanthine phosphoribosyltransferase -
  A8140_RS12990 (A8140_12355) opaR 2724362..2724979 (+) 618 WP_005531723.1 transcriptional regulator OpaR Regulator
  A8140_RS13000 (A8140_12360) lpdA 2725347..2726777 (-) 1431 WP_005531721.1 dihydrolipoyl dehydrogenase -
  A8140_RS13005 (A8140_12365) aceF 2727021..2728919 (-) 1899 WP_038862976.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23765.04 Da        Isoelectric Point: 6.2211

>NTDB_id=182592 A8140_RS12990 WP_005531723.1 2724362..2724979(+) (opaR) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKNEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=182592 A8140_RS12990 WP_005531723.1 2724362..2724979(+) (opaR) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTTTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTATTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTATTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAACGAAGCTGAGTTAAC
GAACCTAGTAAGCGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment