Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B1200_RS24830 Genome accession   NZ_CP019903
Coordinates   4734449..4735186 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain MDR_56     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4729449..4740186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS24815 (B1200_25495) clpC 4729903..4732476 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  B1200_RS24820 (B1200_25500) yfiH 4732606..4733337 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  B1200_RS24825 (B1200_25505) rluD 4733334..4734314 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B1200_RS24830 (B1200_25510) comL 4734449..4735186 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  B1200_RS24835 (B1200_25515) insG 4735290..4736637 (+) 1348 Protein_4565 IS4-like element IS4 family transposase -
  B1200_RS24845 (B1200_25525) raiA 4736898..4737239 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  B1200_RS29765 pheL 4737343..4737390 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  B1200_RS24850 (B1200_25530) pheA 4737489..4738649 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  B1200_RS24855 (B1200_25535) tyrA 4738692..4739813 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=182193 B1200_RS24830 WP_000197684.1 4734449..4735186(+) (comL) [Escherichia coli strain MDR_56]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=182193 B1200_RS24830 WP_000197684.1 4734449..4735186(+) (comL) [Escherichia coli strain MDR_56]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment