Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS33925 Genome accession   NZ_CP019798
Coordinates   7597910..7598590 (-) Length   226 a.a.
NCBI ID   WP_078095869.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7592910..7603590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS33910 (B1K54_33905) - 7594843..7595265 (+) 423 WP_030843124.1 DUF350 domain-containing protein -
  B1K54_RS33915 (B1K54_33910) - 7595384..7596601 (-) 1218 WP_078096450.1 acyltransferase family protein -
  B1K54_RS33920 (B1K54_33915) - 7596610..7597704 (-) 1095 WP_076043516.1 alpha/beta hydrolase -
  B1K54_RS33925 (B1K54_33920) vraR 7597910..7598590 (-) 681 WP_078095869.1 response regulator Regulator
  B1K54_RS33930 (B1K54_33925) - 7598587..7600116 (-) 1530 WP_078095870.1 sensor histidine kinase -
  B1K54_RS33935 (B1K54_33930) - 7600204..7601151 (+) 948 WP_078095871.1 AEC family transporter -
  B1K54_RS33940 (B1K54_33935) - 7601219..7601611 (+) 393 WP_060178381.1 hypothetical protein -
  B1K54_RS33945 (B1K54_33940) - 7601565..7602734 (-) 1170 WP_159425621.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24318.17 Da        Isoelectric Point: 6.1190

>NTDB_id=182064 B1K54_RS33925 WP_078095869.1 7597910..7598590(-) (vraR) [Streptomyces sp. fd1-xmd]
MTIRVVIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRRGVQVSRSTHPDVVLMDVRMPEMDGLAATREILGPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPVLRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGLVRPGDSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=182064 B1K54_RS33925 WP_078095869.1 7597910..7598590(-) (vraR) [Streptomyces sp. fd1-xmd]
TTGACCATCCGCGTGGTCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGCTGTCCGCGCAGGCCGA
CATCGACGTGGTGGGCGAGGCCCCGGACGGGCGCCGGGGGGTACAGGTGTCCCGCTCCACGCACCCCGACGTGGTGTTGA
TGGACGTGCGGATGCCGGAGATGGACGGGTTGGCGGCGACCCGGGAGATCCTCGGCCCGCCGCCCGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCCGGGGCGTCCGGCTTCCT
GCTGAAGGACGCCCCGCCGGCCGACCTGATCGCGGCGGTACGGGTCGTCGCGTCGGGTGAGGCGCTGCTGGCGCCCTCGG
TGACGCGGCGGCTGATCGCCGACTTCGTCCAGCAGCGGCCGGCCCCGCGCAAGGACCCGGTGTTGCGGCTGAACGGTCTG
ACGCCGCGTGAGACGGAGGTGCTGGAGCTGATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGGTCACCTGGTGCTGGC
GGAGCAGACCGTGAAGACGCACATCGGGCGGGTACTGGCCAAGCTCGACCTGCGGGACCGGGCCCAAGCCGTGATCTTCG
CCTACGAGGCGGGCCTGGTGCGCCCGGGCGACTCGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.534

97.788

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381