Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   B1K54_RS25790 Genome accession   NZ_CP019798
Coordinates   5674965..5677157 (+) Length   730 a.a.
NCBI ID   WP_173675263.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5669965..5682157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS25765 (B1K54_25745) - 5670466..5670699 (-) 234 WP_030028650.1 Lrp/AsnC family transcriptional regulator -
  B1K54_RS25770 (B1K54_25750) - 5670945..5671928 (+) 984 WP_030847029.1 thiamine-phosphate kinase -
  B1K54_RS25775 (B1K54_25755) thiD 5671925..5672725 (+) 801 WP_076044099.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  B1K54_RS25780 (B1K54_25760) rpmB 5672844..5673029 (-) 186 WP_007266795.1 50S ribosomal protein L28 -
  B1K54_RS25785 (B1K54_25765) - 5673274..5674938 (+) 1665 WP_060176867.1 DAK2 domain-containing protein -
  B1K54_RS25790 (B1K54_25770) recG 5674965..5677157 (+) 2193 WP_173675263.1 ATP-dependent DNA helicase RecG Machinery gene
  B1K54_RS25795 (B1K54_25775) rsmD 5677231..5677809 (+) 579 WP_060176868.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  B1K54_RS25800 (B1K54_25780) coaD 5677824..5678303 (+) 480 WP_030847041.1 pantetheine-phosphate adenylyltransferase -
  B1K54_RS25805 (B1K54_25785) - 5678407..5679465 (+) 1059 WP_078095148.1 ATP synthase F0 subunit B -
  B1K54_RS25810 (B1K54_25790) - 5679535..5680245 (+) 711 WP_051700260.1 YceD family protein -
  B1K54_RS25815 (B1K54_25795) rpmF 5680248..5680421 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  B1K54_RS25820 (B1K54_25800) rnc 5680441..5681280 (+) 840 WP_030847050.1 ribonuclease III -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 78953.62 Da        Isoelectric Point: 6.3508

>NTDB_id=182049 B1K54_RS25790 WP_173675263.1 5674965..5677157(+) (recG) [Streptomyces sp. fd1-xmd]
MEHVPALDEDLKKTLGPATAKVLAEQLGLHTALDLLHHYPRRYAERGELTSLAELADQIDEHVTVVAQVADARVLTFNGG
RGKRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGSRAMFAGKVSRFNHKLQLAHPAYEPLGADASDRDAATAFANQLIP
IYPACAKLESWKIAKCVDAVLPAAREAVDPLPPALREGRGLVPLTEALLKIHRPATKADIEDARQRLKWDEAFVLQVALA
RRRHADSQLPAVPARPAPGGLLDAFDAKLPFTLTEGQQKVSKEIFDDLATSHPMHRLLQGEVGSGKTMVALRAMLAVVDS
GGQAAMLAPTEVLAQQHHRSIVEMMGELAEGGMLGGSDQGTKVVLLTGSMGMPARRQALLDLVTGEAGIVIGTHALIEDK
VQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAKDK
PHFLARAWERVREEVDKGHQAYVVCPRIGDGEDDPKKKQAAEEADRRPPLAVLEIAEQLGRGPLAGLGVEVLHGRMDPAD
KDDVMRRFAAGEVKVLVATTVIEVGVNVPNSTVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMHEASPARARLA
AVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEVIAQAREEATRVVAEDPALERLPGLRTALDALLD
TEREQYLEKG

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=182049 B1K54_RS25790 WP_173675263.1 5674965..5677157(+) (recG) [Streptomyces sp. fd1-xmd]
ATGGAACACGTGCCCGCGCTCGACGAAGACCTCAAGAAGACGCTCGGTCCCGCCACCGCCAAGGTGCTGGCCGAGCAGCT
CGGCCTGCACACGGCCCTGGACCTGCTCCACCACTACCCGAGGCGGTACGCCGAGCGCGGTGAGCTGACCTCTCTGGCCG
AGCTCGCCGACCAGATCGACGAGCACGTGACCGTCGTCGCGCAGGTCGCCGACGCCCGCGTCCTCACCTTCAACGGGGGC
CGGGGCAAGCGGCTGGAGGTGACCATCACCGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCGCCGGGGTCCACAA
GCCGCACAAGGAGCTGCTCCCCGGCAGCCGCGCGATGTTCGCGGGCAAGGTCTCCAGGTTCAACCACAAGCTCCAGCTGG
CGCACCCGGCGTACGAGCCGCTCGGCGCGGACGCCTCCGACCGCGACGCCGCCACCGCCTTCGCCAACCAGCTCATCCCG
ATCTACCCGGCCTGCGCGAAGCTGGAGTCCTGGAAGATCGCCAAGTGCGTGGACGCCGTACTCCCCGCCGCCCGGGAGGC
CGTGGACCCGCTGCCGCCCGCCCTGCGCGAGGGCCGCGGGCTGGTCCCGCTCACCGAAGCCCTGCTGAAGATCCACCGGC
CGGCCACCAAGGCCGACATCGAGGACGCCCGGCAGCGCCTGAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTGGCC
CGTCGCCGCCACGCCGACTCCCAGCTGCCGGCCGTCCCCGCCCGCCCCGCCCCCGGCGGCCTGCTCGACGCCTTCGACGC
CAAACTCCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTCGCCACCAGCCACCCCA
TGCACCGCCTCCTCCAGGGCGAGGTCGGCAGCGGAAAGACGATGGTGGCCCTGCGGGCCATGCTGGCCGTGGTGGACTCC
GGCGGGCAGGCGGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCCATCGTCGAGATGATGGGCGA
GCTGGCCGAGGGCGGCATGCTCGGCGGCTCCGACCAGGGCACCAAGGTCGTGCTGCTCACCGGGTCGATGGGGATGCCGG
CGCGCCGCCAGGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACGCACGCCCTGATCGAGGACAAG
GTGCAGTTCCACGACCTCGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGAGTGGAGCAGCGCGACGCGCTCCGCTC
CAAGGGCAAGCAGCCGCCGCACCTGCTGGTGATGACGGCCACCCCGATCCCGCGCACCGTCGCGATGACCGTCTTCGGCG
ACCTGGAGACCTCCGTCCTGGACCAGCTGCCCGCCGGGCGCTCGCCGATCGCCACCCACGTGGTGCCGGCCAAGGACAAG
CCGCACTTCCTCGCCCGGGCCTGGGAGCGGGTCCGCGAGGAGGTGGACAAGGGCCACCAGGCGTACGTGGTCTGCCCGCG
CATCGGCGACGGGGAGGACGACCCCAAGAAGAAGCAGGCCGCGGAAGAGGCCGACAGGCGGCCGCCGCTCGCGGTCCTGG
AGATCGCCGAGCAACTGGGCCGCGGACCGCTGGCCGGGCTGGGCGTCGAGGTGCTGCACGGCCGGATGGACCCCGCCGAC
AAGGACGACGTCATGCGCCGGTTCGCGGCCGGCGAGGTGAAGGTGCTGGTCGCCACCACCGTCATCGAGGTCGGGGTGAA
CGTCCCCAACTCCACCGTCATGGTGATCATGGACGCGGACCGGTTCGGGGTCTCCCAGCTCCACCAGCTGCGCGGCCGCG
TCGGCCGCGGCTCCGCCCCAGGCCTGTGCCTGCTGGTCAGCGAGATGCACGAGGCGAGCCCCGCCCGGGCCCGGCTCGCC
GCCGTCGCCGCCACCCTCGACGGCTTCGAGCTCTCCCGGATCGACCTGGAACAGCGGCGCGAGGGCGACGTCCTGGGCCA
GGCCCAGTCGGGCGTGCGCTCCTCGCTGCGCATGCTCGCCGTCATCGACGACGAGGAGGTCATCGCCCAGGCCCGGGAGG
AGGCCACCCGCGTGGTGGCCGAGGATCCGGCGCTGGAGCGCCTGCCGGGCCTGCGGACCGCGCTGGACGCCCTGCTCGAC
ACCGAGCGCGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(63-141)

DEAD/DEAH box helicase (DEAD)

(294-447)

Helicase conserved C-terminal domain (Helicase_C)

(539-617)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(645-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.049

95.068

0.371
  recG Bacillus subtilis subsp. subtilis str. 168

37.447

97.671

0.366