Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   B1K54_RS20665 Genome accession   NZ_CP019798
Coordinates   4587399..4588817 (-) Length   472 a.a.
NCBI ID   WP_030846144.1    Uniprot ID   A0ABX3FXS6
Organism   Streptomyces sp. fd1-xmd     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4582399..4593817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS20640 (B1K54_20630) - 4582429..4582995 (-) 567 WP_030763752.1 SigE family RNA polymerase sigma factor -
  B1K54_RS20645 (B1K54_20635) - 4583290..4584267 (-) 978 WP_107499904.1 A/G-specific adenine glycosylase -
  B1K54_RS20650 (B1K54_20640) - 4584264..4584941 (-) 678 WP_107499905.1 phosphatase PAP2 family protein -
  B1K54_RS20655 (B1K54_20645) - 4585165..4585905 (+) 741 WP_318658178.1 hypothetical protein -
  B1K54_RS20660 (B1K54_20650) disA 4586007..4587131 (-) 1125 WP_078094836.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  B1K54_RS20665 (B1K54_20655) radA/sms 4587399..4588817 (-) 1419 WP_030846144.1 DNA repair protein RadA Machinery gene
  B1K54_RS20670 (B1K54_20660) - 4588974..4590752 (+) 1779 WP_078094837.1 BACON domain-containing protein -
  B1K54_RS20675 (B1K54_20665) - 4590792..4591541 (-) 750 WP_051700214.1 hypothetical protein -
  B1K54_RS20680 (B1K54_20670) - 4591773..4592720 (+) 948 WP_030846151.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49375.65 Da        Isoelectric Point: 8.7267

>NTDB_id=182035 B1K54_RS20665 WP_030846144.1 4587399..4588817(-) (radA/sms) [Streptomyces sp. fd1-xmd]
MAARTARSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASSDTHRTLYVTGEESASQVRLRADRIKALSDHLYLAAETDLSA
VLGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADMGDALRVLPRGRSRTPAKERPAAAQ

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=182035 B1K54_RS20665 WP_030846144.1 4587399..4588817(-) (radA/sms) [Streptomyces sp. fd1-xmd]
ATGGCTGCCCGCACTGCTCGCTCATCCGCCAAGGACCGACCGTCGTACCGCTGCACCGAGTGCGGCTGGACGACGGCCAA
GTGGCTCGGCCGGTGTCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGATGGGGGCTCCCGCCGTCCGGACCACCGCGG
CCGGCCGGGTGTCGACCGCCGCGCTGCCGATCGCCCAGGTCGACGGGCGGACGGCGACCGCGCGCAGCACCGGGGTGGAC
GAGCTGGACCGTGTCCTGGGCGGCGGGCTCGTACCGGGCGCCGTCGTCCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTCGCGGCGAAGGCGTCCAGCGACACGCACCGCACGCTGTACGTCACGGGTGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGGGCCGACCGCATCAAGGCGCTGAGCGACCACCTGTACCTCGCCGCCGAGACCGACCTCTCCGCG
GTGCTCGGGCACCTCGACGCCGTGAAGCCGTCCCTGCTCGTCCTGGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGGGGCATGGCCA
CCCTCCTCGTCGGCCACGTCACCAAGGACGGGGCCATCGCCGGTCCCCGCCTGCTGGAGCACCTCGTCGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGGCTCGTGCGCGGTGTGAAGAACCGCTACGGCGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCGGAGGCCG
TGCCGGGGACCTGCCTGACCGTGACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCTCCCCGGCGGACCACCTCGGGCCTGGAGACCTCACGTGTCTCGATGATGCTGGCCGTCCTGGAGCAGCG
CGGCCGGATCACCGCGCTCGGCAAGCGCGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTCACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCGCTGGCGTCCGCCGCCAGCGACGTACCGCTCCCGAAGAACCTGGTGGCCATCGGCGAGGTC
GGCCTGGCCGGCGAGGTGCGCCGGGTGACGGGCGTGCAGCGGCGGCTGGCGGAGGCGCACCGGCTGGGCTTCACGCACGC
GCTGGTGCCGGCGGATCCGGGCAAGGTGCCGGCGGGGATGAAGGTCACCGAGGTGGCCGACATGGGCGACGCGCTGCGGG
TCCTGCCGCGCGGACGCTCCCGTACGCCGGCCAAGGAGCGGCCCGCGGCCGCGCAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.592

95.975

0.428
  radA Streptococcus pneumoniae Rx1

44.393

90.678

0.403
  radA Streptococcus pneumoniae D39

44.393

90.678

0.403
  radA Streptococcus pneumoniae R6

44.393

90.678

0.403
  radA Streptococcus pneumoniae TIGR4

44.393

90.678

0.403
  radA Streptococcus mitis SK321

44.393

90.678

0.403
  radA Streptococcus mitis NCTC 12261

44.393

90.678

0.403