Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS16955 Genome accession   NZ_CP019798
Coordinates   3795047..3795670 (+) Length   207 a.a.
NCBI ID   WP_030854716.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3790047..3800670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS16930 (B1K54_16905) - 3790285..3790860 (+) 576 WP_030854704.1 TerD family protein -
  B1K54_RS16935 (B1K54_16910) - 3790947..3791471 (+) 525 WP_030854706.1 GNAT family N-acetyltransferase -
  B1K54_RS16940 (B1K54_16915) - 3791486..3792898 (-) 1413 WP_078094552.1 M1 family metallopeptidase -
  B1K54_RS16945 (B1K54_16920) - 3792931..3793488 (-) 558 WP_078094553.1 GlcG/HbpS family heme-binding protein -
  B1K54_RS16950 (B1K54_16925) - 3793887..3795050 (+) 1164 WP_078094554.1 sensor histidine kinase -
  B1K54_RS16955 (B1K54_16930) vraR 3795047..3795670 (+) 624 WP_030854716.1 response regulator Regulator
  B1K54_RS16960 (B1K54_16935) - 3795716..3796219 (+) 504 WP_060180093.1 hypothetical protein -
  B1K54_RS16965 (B1K54_16940) - 3796232..3797236 (-) 1005 Protein_3363 glycosyl hydrolase -
  B1K54_RS16970 (B1K54_16945) - 3797546..3798220 (-) 675 WP_078094556.1 pentapeptide repeat-containing protein -
  B1K54_RS16975 (B1K54_16950) - 3798301..3798774 (-) 474 WP_060180085.1 GNAT family N-acetyltransferase -
  B1K54_RS16980 (B1K54_16955) - 3798784..3799692 (-) 909 WP_076047071.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21869.12 Da        Isoelectric Point: 5.5991

>NTDB_id=182022 B1K54_RS16955 WP_030854716.1 3795047..3795670(+) (vraR) [Streptomyces sp. fd1-xmd]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLHPDVVLMDLQLGEGIDGVEATRRITALPQPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHSAAQGRTTLSAPVASRVMAHMRGGRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLPS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=182022 B1K54_RS16955 WP_030854716.1 3795047..3795670(+) (vraR) [Streptomyces sp. fd1-xmd]
ATGACGACGATCCTGCTCTGCGACGACCACGTCGTGGTCCGCGCCGGCCTGCTGGCCCTCCTCGGCAGCGAACCCGACAT
CGAGGTCCTCGGCGAGGCCGGCAGCGGCGAGGAGGCCGTCGCCCTGGCCGCCAAGCTCCACCCCGACGTGGTCCTCATGG
ACCTCCAGCTCGGCGAGGGCATCGACGGCGTCGAGGCCACCCGCCGCATCACCGCGCTCCCACAGCCCCCGCACGTCCTG
GTCCTCACCACCTACGACACGGACGCGGACATCACCCGGGCGATCGGCGCGGGCGCCACCGGCTACCTCCTGAAAGCCGA
ACGCCCCGAGGAGCTCTTCGCCGCCATCCACTCCGCCGCCCAGGGCCGCACCACCCTCTCCGCGCCGGTCGCCAGCCGCG
TCATGGCCCACATGCGCGGCGGCCGCCCCACCCTCACCGACCGCGAACTGGACATCCTCGGGCAGCTGGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTCAAAACCCACCTGGGGCGCATCTACGACAAACT
CGGAGTCGACACCCGCGCGGGCGCCGTGTCGGTCGCGAAGGAACAGCGCCTCCTGCCCTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.806

99.517

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

35.484

100

0.372