Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B1K54_RS09360 Genome accession   NZ_CP019798
Coordinates   2111934..2112596 (-) Length   220 a.a.
NCBI ID   WP_078093959.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2106934..2117596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS09325 (B1K54_09325) - 2107508..2108494 (-) 987 WP_030849804.1 SPFH domain-containing protein -
  B1K54_RS09330 (B1K54_09330) - 2108579..2109007 (-) 429 WP_030849801.1 NfeD family protein -
  B1K54_RS09335 (B1K54_09335) - 2109103..2109897 (-) 795 WP_030849799.1 ABC transporter ATP-binding protein -
  B1K54_RS09340 (B1K54_09340) - 2110031..2110813 (+) 783 WP_078093957.1 hypothetical protein -
  B1K54_RS38300 (B1K54_09345) - 2110904..2111026 (-) 123 Protein_1852 YncE family protein -
  B1K54_RS38305 (B1K54_09350) - 2110981..2111289 (-) 309 Protein_1853 hypothetical protein -
  B1K54_RS09355 (B1K54_09355) - 2111539..2111784 (-) 246 WP_030849786.1 chaplin -
  B1K54_RS09360 (B1K54_09360) vraR 2111934..2112596 (-) 663 WP_078093959.1 response regulator Regulator
  B1K54_RS09365 (B1K54_09365) - 2112589..2113752 (-) 1164 WP_030849779.1 GAF domain-containing sensor histidine kinase -
  B1K54_RS09370 (B1K54_09370) - 2113931..2114632 (+) 702 Protein_1857 SDR family NAD(P)-dependent oxidoreductase -
  B1K54_RS09375 (B1K54_09375) - 2114757..2115857 (+) 1101 WP_225884685.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  B1K54_RS09380 (B1K54_09380) - 2116154..2116843 (+) 690 WP_030849769.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23869.17 Da        Isoelectric Point: 5.4127

>NTDB_id=182004 B1K54_RS09360 WP_078093959.1 2111934..2112596(-) (vraR) [Streptomyces sp. fd1-xmd]
MADNTGRSGARIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEAADGDEGIARAEELRPDVVLMDVKMPGTDGIEALRRLR
ELANPARVLVVTSFTEQRTAVPALRAGAAGYVYKDIDPDALAAAIRSVRAGHVLLQPEVAQALLSQDDQGSPAGRPGSLT
EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGMAE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=182004 B1K54_RS09360 WP_078093959.1 2111934..2112596(-) (vraR) [Streptomyces sp. fd1-xmd]
GTGGCTGACAACACCGGCCGAAGCGGCGCCCGCATCCGTGTCCTGCTGGTGGACGACCACCAGGTGGTCCGGCGGGGCCT
GCGCACCTTCCTGGAGGTCCAGGAGGACATCGAGGTGGTCGGGGAGGCCGCCGACGGCGACGAGGGCATCGCCCGCGCCG
AGGAGCTGCGGCCCGACGTGGTCCTCATGGACGTGAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCCGGCTGCGC
GAGCTGGCGAACCCCGCGCGGGTGCTGGTCGTCACCAGCTTCACGGAGCAGCGGACCGCGGTCCCCGCCCTGCGCGCCGG
CGCGGCGGGATACGTCTACAAGGACATCGACCCCGACGCCCTGGCCGCCGCCATCCGCTCCGTCCGTGCCGGCCACGTCC
TGCTCCAGCCGGAGGTCGCGCAGGCCCTGCTCTCCCAGGACGACCAGGGCTCCCCGGCGGGCCGCCCCGGCTCGCTGACC
GAGCGCGAGCGCGAGGTCCTCGGCCTCATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTGGTGCTGTCCGA
GAAGACGGTCAAGACGCACGTCTCGAACATCCTGATGAAGTTGGACCTTTCCGACCGGACCCAGGCCGCATTGTGGGCGG
TCAGGCACGGAATGGCCGAGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(14-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

95

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.395