Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STRMOE7_RS28405 Genome accession   NZ_CP019779
Coordinates   6403463..6404125 (+) Length   220 a.a.
NCBI ID   WP_084774329.1    Uniprot ID   -
Organism   Streptomyces sp. MOE7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6398463..6409125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRMOE7_RS28385 (STRMOE7_28375) - 6398817..6399047 (-) 231 WP_033267354.1 hypothetical protein -
  STRMOE7_RS28390 (STRMOE7_28380) - 6399490..6401610 (+) 2121 WP_033267353.1 DNA topoisomerase IV subunit B -
  STRMOE7_RS28395 (STRMOE7_28385) - 6401768..6402256 (+) 489 WP_084774328.1 DUF1453 family protein -
  STRMOE7_RS28400 (STRMOE7_28390) - 6402300..6403466 (+) 1167 WP_107487586.1 histidine kinase -
  STRMOE7_RS28405 (STRMOE7_28395) vraR 6403463..6404125 (+) 663 WP_084774329.1 response regulator transcription factor Regulator
  STRMOE7_RS28410 (STRMOE7_28400) - 6404232..6404728 (+) 497 Protein_5640 DUF485 domain-containing protein -
  STRMOE7_RS28415 (STRMOE7_28405) - 6404725..6406329 (+) 1605 WP_084774331.1 cation acetate symporter -
  STRMOE7_RS28420 (STRMOE7_28410) - 6406381..6407055 (-) 675 WP_077193635.1 response regulator -
  STRMOE7_RS28425 (STRMOE7_28415) - 6407052..6408785 (-) 1734 WP_336599221.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23652.98 Da        Isoelectric Point: 5.1351

>NTDB_id=181982 STRMOE7_RS28405 WP_084774329.1 6403463..6404125(+) (vraR) [Streptomyces sp. MOE7]
MTARVVVADDQTVVREGIVMLLGLLPDIEVVGSAADGEEAVRLVAACAPDVVLMDLRMPRCDGVEATRRIRADHPGTQVV
VLTTYADDDDLFPALRAGARGYLTKDADGDEIARAITGVLSGEAGLSPKIQRRLLERVTEPVRTVPQPPDDPPDGLTARE
VEVLRLVAEGQSNPEIARTLHVSTATVKTHINNLFAKAGLRDRAQAIRYAYRHGLAQPPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=181982 STRMOE7_RS28405 WP_084774329.1 6403463..6404125(+) (vraR) [Streptomyces sp. MOE7]
ATGACGGCGCGGGTCGTGGTGGCCGACGACCAGACGGTGGTGCGCGAGGGAATCGTGATGCTGCTGGGGCTGTTGCCGGA
CATCGAGGTCGTCGGATCGGCCGCGGACGGCGAGGAGGCGGTCCGTCTGGTGGCCGCATGCGCTCCCGACGTCGTCCTGA
TGGACCTGCGCATGCCGCGCTGCGACGGCGTGGAGGCCACCCGCCGCATCCGCGCCGACCACCCCGGCACCCAGGTCGTG
GTGCTCACCACCTACGCCGACGACGACGATCTCTTCCCCGCCCTGCGGGCCGGCGCCCGCGGCTATCTGACCAAGGACGC
GGACGGCGACGAGATCGCCCGTGCCATCACCGGCGTGCTCTCCGGGGAGGCCGGCCTCTCGCCGAAGATCCAGCGCAGGC
TCCTGGAGCGCGTCACGGAGCCCGTACGGACCGTGCCGCAACCGCCGGACGACCCGCCGGACGGGCTGACCGCCCGCGAG
GTGGAGGTGCTGCGACTGGTCGCCGAGGGCCAGTCCAACCCGGAGATCGCCCGCACGCTGCACGTCTCCACCGCCACCGT
GAAGACCCACATCAACAACCTCTTCGCCAAGGCGGGGCTGCGGGACCGCGCCCAGGCCATCCGCTACGCCTACCGTCACG
GCCTCGCACAGCCACCCGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.71

98.636

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.382