Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STRMOE7_RS24525 Genome accession   NZ_CP019779
Coordinates   5507467..5508105 (-) Length   212 a.a.
NCBI ID   WP_084773386.1    Uniprot ID   -
Organism   Streptomyces sp. MOE7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5502467..5513105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRMOE7_RS24505 (STRMOE7_24485) - 5503695..5504081 (-) 387 WP_084773383.1 hypothetical protein -
  STRMOE7_RS24510 (STRMOE7_24490) - 5504191..5504529 (+) 339 WP_237323724.1 hypothetical protein -
  STRMOE7_RS24515 (STRMOE7_24495) - 5504822..5506102 (+) 1281 WP_084773385.1 Ig-like domain-containing protein -
  STRMOE7_RS24520 (STRMOE7_24500) - 5506148..5507431 (+) 1284 WP_237323725.1 DUF2786 domain-containing protein -
  STRMOE7_RS24525 (STRMOE7_24505) vraR 5507467..5508105 (-) 639 WP_084773386.1 response regulator transcription factor Regulator
  STRMOE7_RS24530 (STRMOE7_24510) - 5508095..5509129 (-) 1035 WP_237323726.1 sensor histidine kinase -
  STRMOE7_RS39320 - 5509072..5509356 (-) 285 WP_237323727.1 hypothetical protein -
  STRMOE7_RS24535 (STRMOE7_24515) - 5509590..5510147 (+) 558 WP_237323728.1 hypothetical protein -
  STRMOE7_RS24540 (STRMOE7_24520) - 5510153..5511058 (-) 906 WP_084773390.1 HNH endonuclease -
  STRMOE7_RS24545 (STRMOE7_24525) - 5511195..5512652 (-) 1458 WP_084773392.1 amino acid permease -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22369.74 Da        Isoelectric Point: 6.1216

>NTDB_id=181964 STRMOE7_RS24525 WP_084773386.1 5507467..5508105(-) (vraR) [Streptomyces sp. MOE7]
MTFERTAAVRVLLADDHPVVREGLCAMLASDPGIEIAGQAGSGEEAVTQAERLAPDVVLLDLRMGGMDGVAATGHILRRS
PRSRVVIVTTYEDDGDILRAVEAGAAGYLLKGSSRAQLVEAVHAAARGETVLTPSLAGKLVRARTEVAPLLSGRECEVLR
LVGQGLSNAEIGRELFIGEATVKTHLLRAFRKLDVADRTAAVLTALERGLLS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=181964 STRMOE7_RS24525 WP_084773386.1 5507467..5508105(-) (vraR) [Streptomyces sp. MOE7]
ATGACGTTTGAGCGGACGGCCGCGGTCAGGGTGCTGCTGGCCGACGACCACCCCGTCGTACGGGAGGGGCTGTGCGCGAT
GCTCGCCTCCGACCCGGGCATCGAGATCGCCGGGCAGGCGGGCTCCGGCGAGGAGGCGGTGACGCAGGCGGAGCGGCTGG
CGCCGGACGTCGTGCTGCTCGATCTGCGGATGGGCGGGATGGACGGGGTCGCGGCGACCGGCCACATCCTGCGGCGTTCG
CCGCGCAGCAGGGTGGTCATCGTCACCACGTACGAGGACGACGGCGACATCCTGCGCGCGGTGGAGGCGGGCGCGGCCGG
CTATCTGCTCAAGGGGAGCTCACGGGCGCAGCTGGTCGAGGCGGTGCACGCCGCGGCGCGGGGCGAGACGGTGCTGACGC
CGTCGCTGGCCGGAAAGCTGGTCCGGGCGCGGACGGAGGTGGCGCCGCTGCTGTCCGGCCGGGAGTGCGAGGTGCTGCGG
CTGGTCGGTCAGGGGCTGAGCAACGCCGAGATCGGCCGGGAGCTGTTCATCGGTGAGGCCACGGTCAAGACGCATCTGCT
GCGCGCGTTCAGGAAGCTCGACGTGGCGGACCGGACCGCGGCGGTGCTCACGGCGCTGGAGCGCGGTCTGCTGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-122)

Bacterial regulatory proteins, luxR family (GerE)

(150-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.647

97.642

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

35.426

100

0.373