Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STRMOE7_RS12830 Genome accession   NZ_CP019779
Coordinates   2876617..2877294 (+) Length   225 a.a.
NCBI ID   WP_084771125.1    Uniprot ID   -
Organism   Streptomyces sp. MOE7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2871617..2882294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRMOE7_RS12810 (STRMOE7_12790) - 2871955..2872614 (+) 660 WP_084771121.1 TetR/AcrR family transcriptional regulator -
  STRMOE7_RS12815 (STRMOE7_12795) - 2872813..2874027 (+) 1215 WP_084771122.1 alpha/beta hydrolase -
  STRMOE7_RS12820 (STRMOE7_12800) - 2874241..2875119 (+) 879 WP_084771123.1 DUF4429 domain-containing protein -
  STRMOE7_RS12825 (STRMOE7_12805) - 2875220..2876620 (+) 1401 WP_107487368.1 sensor histidine kinase -
  STRMOE7_RS12830 (STRMOE7_12810) vraR 2876617..2877294 (+) 678 WP_084771125.1 response regulator transcription factor Regulator
  STRMOE7_RS12835 (STRMOE7_12815) - 2877478..2878644 (+) 1167 WP_084771126.1 alpha/beta hydrolase -
  STRMOE7_RS12840 (STRMOE7_12820) - 2878715..2879952 (+) 1238 Protein_2580 acyltransferase -
  STRMOE7_RS12845 (STRMOE7_12825) - 2880105..2881130 (-) 1026 WP_084771127.1 aldo/keto reductase -
  STRMOE7_RS12850 (STRMOE7_12830) - 2881138..2881626 (-) 489 WP_084771128.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24285.14 Da        Isoelectric Point: 5.3869

>NTDB_id=181940 STRMOE7_RS12830 WP_084771125.1 2876617..2877294(+) (vraR) [Streptomyces sp. MOE7]
MTTRVIIVDDQAMVRAGFAALLAAQSDIDVVGDAPDGLQGVALSRRTHPDVVLMDVRMPEMDGLEAARQLLDPPIGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTRRLIADFARRPAPRKDRGALRLNGL
TPRETEVLELIARGLSNQEIAEALILAEQTVKTHIGRVLAKLELRDRAQAVIFAYESGLVAPGER

Nucleotide


Download         Length: 678 bp        

>NTDB_id=181940 STRMOE7_RS12830 WP_084771125.1 2876617..2877294(+) (vraR) [Streptomyces sp. MOE7]
ATGACCACGCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGAGCGGGGTTCGCCGCACTGCTCGCCGCGCAGAGCGA
CATCGATGTGGTGGGCGACGCGCCCGACGGGTTGCAGGGAGTGGCGCTCAGCCGCCGGACCCACCCGGACGTGGTGCTGA
TGGACGTCCGGATGCCGGAGATGGACGGGCTGGAGGCCGCCCGCCAGCTGCTGGATCCGCCGATCGGCGTGGTCCACCGG
CCGAAGGTGCTGATGCTGACGACCTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCT
GCTCAAGGACGCGCCGCCGGCCGATCTGATCTCCGCGGTGCGGGTGGTGGCGGCCGGTGAGGCGCTGCTCGCGCCGTCGG
TGACCCGGCGGCTGATCGCCGATTTCGCCCGGCGCCCGGCGCCCCGCAAGGACCGCGGCGCACTCCGGCTGAACGGTCTC
ACCCCGCGGGAGACGGAGGTGCTGGAGCTGATCGCCCGGGGGCTGTCGAACCAGGAGATCGCCGAGGCGCTGATCCTCGC
CGAGCAGACCGTGAAGACCCACATCGGCCGGGTGCTCGCCAAGTTGGAGCTGCGGGACCGGGCGCAAGCCGTGATCTTCG
CGTACGAATCGGGGCTGGTGGCGCCCGGCGAGCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.534

98.222

0.418
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.378