Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STRMOE7_RS09950 Genome accession   NZ_CP019779
Coordinates   2216588..2217235 (-) Length   215 a.a.
NCBI ID   WP_084770519.1    Uniprot ID   -
Organism   Streptomyces sp. MOE7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2211588..2222235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRMOE7_RS09915 (STRMOE7_09895) - 2212183..2213121 (-) 939 WP_033270467.1 SPFH domain-containing protein -
  STRMOE7_RS09920 (STRMOE7_09900) - 2213223..2213636 (-) 414 WP_084770516.1 NfeD family protein -
  STRMOE7_RS09925 (STRMOE7_09905) - 2213735..2214544 (-) 810 WP_084770517.1 ABC transporter ATP-binding protein -
  STRMOE7_RS09930 (STRMOE7_09910) - 2214634..2215446 (+) 813 WP_033270470.1 hypothetical protein -
  STRMOE7_RS09940 (STRMOE7_09920) - 2215730..2215975 (-) 246 WP_084770518.1 chaplin -
  STRMOE7_RS09945 (STRMOE7_09925) - 2216146..2216388 (-) 243 WP_033270472.1 chaplin -
  STRMOE7_RS09950 (STRMOE7_09930) vraR 2216588..2217235 (-) 648 WP_084770519.1 response regulator transcription factor Regulator
  STRMOE7_RS09955 (STRMOE7_09935) - 2217228..2218385 (-) 1158 WP_084770520.1 GAF domain-containing sensor histidine kinase -
  STRMOE7_RS09960 (STRMOE7_09940) - 2218570..2219445 (+) 876 WP_084770521.1 SDR family oxidoreductase -
  STRMOE7_RS09965 (STRMOE7_09945) - 2219442..2220569 (+) 1128 WP_084770522.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  STRMOE7_RS09970 (STRMOE7_09950) - 2220586..2221287 (+) 702 WP_173675705.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23030.27 Da        Isoelectric Point: 5.1363

>NTDB_id=181934 STRMOE7_RS09950 WP_084770519.1 2216588..2217235(-) (vraR) [Streptomyces sp. MOE7]
MADIRSIHVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGIAAAEQLRPDVVLMDVKMPGTDGIEALRKLRELDNP
ARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPEALAAAIRSVHAGHVVLQPEVAGALLAQEEGNGGQGRGTSLTDRESE
VLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGIGA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=181934 STRMOE7_RS09950 WP_084770519.1 2216588..2217235(-) (vraR) [Streptomyces sp. MOE7]
GTGGCTGACATCCGGTCGATCCACGTCCTGCTCGTCGACGACCACCAGGTCGTACGCCGCGGGCTGCGGACGTTCCTGGA
GGTCCAGGACGACATCGAGGTGGTGGGGGAGGCCGCCGACGGGGCCGAGGGCATCGCCGCCGCCGAACAACTGCGCCCGG
ACGTCGTCCTGATGGACGTGAAGATGCCCGGCACGGACGGCATCGAGGCGCTGCGCAAGCTGCGCGAACTCGACAACCCC
GCCCGGGTGCTGGTGGTGACCAGCTTCACCGAGCAGCGCACCGTCGTCCCGGCGCTGCGCGCGGGCGCGGCCGGCTACGT
CTACAAGGACATCGACCCCGAGGCGCTGGCCGCCGCCATCCGCTCCGTGCACGCCGGCCACGTCGTGCTGCAGCCCGAGG
TGGCCGGCGCGCTGCTCGCGCAGGAGGAGGGCAACGGCGGGCAGGGGCGCGGCACCTCCCTCACCGACCGGGAGAGCGAG
GTGCTCGCGCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTGTCGGAGAAGACCGTCAAGAC
CCACGTCTCCAACATCCTCATGAAGCTCGACCTCGCCGACCGCACGCAGGCCGCGCTGTGGGCCGTACGGCACGGAATCG
GGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-121)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.755

98.605

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

37.387

100

0.386