Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B0908_RS14880 Genome accession   NZ_CP019777
Coordinates   2891223..2891960 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli NU14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886223..2896960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0908_RS14865 (B0908_14865) clpC 2886677..2889250 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  B0908_RS14870 (B0908_14870) yfiH 2889380..2890111 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  B0908_RS14875 (B0908_14875) rluD 2890108..2891088 (-) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B0908_RS14880 (B0908_14880) comL 2891223..2891960 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  B0908_RS14890 (B0908_14890) raiA 2892230..2892571 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  B0908_RS26385 pheL 2892675..2892722 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  B0908_RS14895 (B0908_14895) pheA 2892821..2893981 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  B0908_RS14900 (B0908_14900) tyrA 2894024..2895145 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  B0908_RS14905 (B0908_14905) aroF 2895156..2896226 (-) 1071 WP_001168026.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  B0908_RS14910 (B0908_14910) yfiL 2896436..2896801 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=181783 B0908_RS14880 WP_000197686.1 2891223..2891960(+) (comL) [Escherichia coli NU14]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=181783 B0908_RS14880 WP_000197686.1 2891223..2891960(+) (comL) [Escherichia coli NU14]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376