Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A7P66_RS08620 Genome accession   NZ_CP015645
Coordinates   1669578..1670147 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-02119     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664578..1675147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7P66_RS08585 (A7P66_08585) - 1665052..1665660 (-) 609 WP_042909178.1 class I SAM-dependent methyltransferase -
  A7P66_RS08590 (A7P66_08590) rplL 1665835..1666203 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  A7P66_RS08595 (A7P66_08595) rplJ 1666246..1666746 (-) 501 WP_064646649.1 50S ribosomal protein L10 -
  A7P66_RS08600 (A7P66_08600) rplA 1667018..1667710 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  A7P66_RS08605 (A7P66_08605) rplK 1667918..1668340 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  A7P66_RS08610 (A7P66_08610) nusG 1668521..1669069 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  A7P66_RS08615 (A7P66_08615) secE 1669082..1669264 (-) 183 WP_031785167.1 preprotein translocase subunit SecE -
  A7P66_RS14545 rpmG 1669320..1669463 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  A7P66_RS08620 (A7P66_08620) sigH 1669578..1670147 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  A7P66_RS08625 (A7P66_08625) - 1670228..1670752 (-) 525 WP_000664738.1 NYN domain-containing protein -
  A7P66_RS08630 (A7P66_08630) rlmB 1670752..1671498 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A7P66_RS08635 (A7P66_08635) - 1671506..1671910 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  A7P66_RS08640 (A7P66_08640) cysS 1671903..1673303 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  A7P66_RS08645 (A7P66_08645) cysE 1673287..1673934 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=181729 A7P66_RS08620 WP_000872873.1 1669578..1670147(-) (sigH) [Staphylococcus aureus strain 08-02119]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=181729 A7P66_RS08620 WP_000872873.1 1669578..1670147(-) (sigH) [Staphylococcus aureus strain 08-02119]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment