Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A7317_RS03385 | Genome accession | NZ_CP015637 |
| Coordinates | 800626..801492 (+) | Length | 288 a.a. |
| NCBI ID | WP_069075202.1 | Uniprot ID | A0AB36Y547 |
| Organism | Pseudomonas fluorescens strain L321 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 795626..806492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7317_RS03355 (A7317_03350) | nadC | 795824..796672 (+) | 849 | WP_024073388.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| A7317_RS03360 (A7317_03355) | - | 796794..797099 (-) | 306 | WP_024073387.1 | DUF6388 family protein | - |
| A7317_RS03370 (A7317_03365) | - | 797362..798771 (-) | 1410 | WP_069075200.1 | O-antigen ligase family protein | - |
| A7317_RS03375 (A7317_03370) | - | 798806..799219 (-) | 414 | WP_024073385.1 | pilin | - |
| A7317_RS03380 (A7317_03375) | pilC | 799421..800629 (+) | 1209 | WP_069075201.1 | type II secretion system F family protein | Machinery gene |
| A7317_RS03385 (A7317_03380) | pilD | 800626..801492 (+) | 867 | WP_069075202.1 | prepilin peptidase | Machinery gene |
| A7317_RS03390 (A7317_03385) | coaE | 801489..802112 (+) | 624 | WP_024073382.1 | dephospho-CoA kinase | - |
| A7317_RS03395 (A7317_03390) | yacG | 802109..802309 (+) | 201 | WP_017845472.1 | DNA gyrase inhibitor YacG | - |
| A7317_RS03400 (A7317_03395) | - | 802306..802521 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| A7317_RS03405 (A7317_03400) | - | 802598..803287 (-) | 690 | WP_024073381.1 | energy-coupling factor ABC transporter permease | - |
| A7317_RS03410 (A7317_03405) | - | 803284..803751 (-) | 468 | WP_069075203.1 | FAD/FMN-containing dehydrogenase | - |
| A7317_RS03415 (A7317_03410) | - | 803852..804481 (+) | 630 | WP_017845475.1 | DUF1780 domain-containing protein | - |
| A7317_RS03420 (A7317_03415) | - | 804571..804744 (+) | 174 | WP_024073379.1 | DUF3094 family protein | - |
| A7317_RS03425 (A7317_03420) | - | 804805..806103 (+) | 1299 | WP_017845476.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31860.16 Da Isoelectric Point: 7.0716
>NTDB_id=181565 A7317_RS03385 WP_069075202.1 800626..801492(+) (pilD) [Pseudomonas fluorescens strain L321]
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=181565 A7317_RS03385 WP_069075202.1 800626..801492(+) (pilD) [Pseudomonas fluorescens strain L321]
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.317 |
96.528 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
51.254 |
96.875 |
0.497 |
| pilD | Acinetobacter nosocomialis M2 |
51.282 |
94.792 |
0.486 |
| pilD | Acinetobacter baumannii D1279779 |
51.282 |
94.792 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
49.259 |
93.75 |
0.462 |