Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   AsACE_RS13685 Genome accession   NZ_CP015615
Coordinates   2827651..2828805 (+) Length   384 a.a.
NCBI ID   WP_076754610.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822651..2833805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13670 (AsACE_CH02721) - 2824401..2826416 (-) 2016 WP_076754606.1 TonB-dependent copper receptor -
  AsACE_RS13675 (AsACE_CH02722) - 2826488..2826907 (-) 420 WP_076754608.1 DUF2946 family protein -
  AsACE_RS13680 (AsACE_CH02723) def 2827000..2827530 (-) 531 WP_005220256.1 peptide deformylase -
  AsACE_RS13685 (AsACE_CH02724) tsaP 2827651..2828805 (+) 1155 WP_076754610.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AsACE_RS13690 (AsACE_CH02725) dprA 2828898..2830037 (+) 1140 WP_076754612.1 DNA-processing protein DprA Machinery gene
  AsACE_RS13695 (AsACE_CH02726) - 2830078..2830653 (+) 576 WP_004895281.1 L-threonylcarbamoyladenylate synthase -
  AsACE_RS13705 (AsACE_CH02727) - 2831050..2831961 (-) 912 WP_076754617.1 DMT family transporter -
  AsACE_RS13710 (AsACE_CH02728) - 2832185..2832730 (+) 546 WP_076754619.1 glutathione peroxidase -
  AsACE_RS13715 (AsACE_CH02729) - 2832944..2833324 (+) 381 WP_076754621.1 RcnB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42174.52 Da        Isoelectric Point: 9.0719

>NTDB_id=181545 AsACE_RS13685 WP_076754610.1 2827651..2828805(+) (tsaP) [Acinetobacter schindleri strain ACE]
MKKVLKGMPTFSALGIKNQMLALAVCVGVGMGTISITHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKMFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=181545 AsACE_RS13685 WP_076754610.1 2827651..2828805(+) (tsaP) [Acinetobacter schindleri strain ACE]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAATTACACATGCAGCGCCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGTCTGCTGATGTGTGATTA
CCAGGGGCGCCCAATCATTGGTAAAGATGAAGGCGATGGCTGTACCGGTATTATCAATCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTGCGTATTGAATCGCTCAACAATACCATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGCGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGCAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCCAATGGTAAAAAATACACCGCTGCCCTAGAACTGCAACAGGTTGCTTCTGGTATCGCAGTCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGATAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGCGGCATAGCACATGGTGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAACGTGTACAGCTCCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAATGTTTGATCAGTTCAGCTATGCCTATGTTCTAGACAGTGAATTGCCAATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682

Multiple sequence alignment