Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AsACE_RS12640 Genome accession   NZ_CP015615
Coordinates   2611182..2611817 (+) Length   211 a.a.
NCBI ID   WP_076754385.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2606182..2616817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS12630 (AsACE_CH02516) - 2608297..2609115 (-) 819 WP_076754381.1 NAD-dependent epimerase/dehydratase family protein -
  AsACE_RS12635 (AsACE_CH02517) recG 2609150..2611195 (+) 2046 WP_076754383.1 ATP-dependent DNA helicase RecG -
  AsACE_RS12640 (AsACE_CH02518) comF 2611182..2611817 (+) 636 WP_076754385.1 ComF family protein Machinery gene
  AsACE_RS12645 (AsACE_CH02519) - 2611819..2612220 (-) 402 WP_076754388.1 NUDIX domain-containing protein -
  AsACE_RS12650 (AsACE_CH02520) - 2612251..2612841 (-) 591 WP_076754391.1 TIGR00730 family Rossman fold protein -
  AsACE_RS12655 (AsACE_CH02521) - 2612995..2614008 (+) 1014 WP_004809844.1 CorA family divalent cation transporter -
  AsACE_RS12660 (AsACE_CH02522) - 2614278..2614568 (-) 291 WP_008303021.1 STAS domain-containing protein -
  AsACE_RS12665 (AsACE_CH02523) - 2614581..2615216 (-) 636 WP_004809849.1 phospholipid-binding protein MlaC -
  AsACE_RS12670 (AsACE_CH02524) - 2615234..2615911 (-) 678 WP_071319844.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AsACE_RS12675 (AsACE_CH02525) mlaE 2615911..2616690 (-) 780 WP_004809853.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24319.43 Da        Isoelectric Point: 9.3456

>NTDB_id=181532 AsACE_RS12640 WP_076754385.1 2611182..2611817(+) (comF) [Acinetobacter schindleri strain ACE]
MPMSKLIQQGKHWLGKLQPCQLCHNDYQTIYSVCQDCWNQLPWAHQTIQRQEMQVQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGTLISLKLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLQVPVWQPVSRLKQHSQKGLSRLERIEDIEAQF
QISTSSKLRYRKVLIIDDVVTTGSSIRALNQKLEELGCQQIYTACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=181532 AsACE_RS12640 WP_076754385.1 2611182..2611817(+) (comF) [Acinetobacter schindleri strain ACE]
ATGCCTATGTCTAAGCTGATTCAGCAAGGCAAGCATTGGCTGGGCAAGTTACAGCCCTGCCAGCTTTGTCATAACGATTA
TCAAACAATTTATTCAGTATGCCAGGATTGCTGGAACCAGCTACCCTGGGCACATCAGACCATCCAGCGCCAGGAAATGC
AGGTACAGATTGCCTGCCATTATGATTATCCGATGGATCGTCTGATTCAGTTGTTCAAATATGAGCAGAAGCTTTATCTG
GAAAACTTGTTAGCAGGCACGCTTATCAGTTTAAAACTTCCCAAAGTCAGCGCAGTCGTTCCGATGCCAATCTCGACAGA
CAAACTGGTACAGCGTGGCTATAACCAGTCCTTACTGCTGGCTAAACAGGTCGCAAAGCATCTTCAAGTTCCAGTATGGC
AACCGGTGAGCCGGCTCAAACAGCATTCACAAAAAGGCTTAAGCCGCCTGGAACGGATTGAAGATATTGAAGCACAATTT
CAGATCAGTACATCATCAAAATTGCGTTATCGTAAAGTACTGATTATTGATGATGTGGTAACAACTGGTAGTTCAATTCG
TGCACTTAATCAGAAGCTCGAAGAACTTGGCTGCCAGCAAATTTATACAGCCTGTGTCGCAGGTGCAAAGCTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.622

91.469

0.555
  comF Acinetobacter baumannii D1279779

60.104

91.469

0.55

Multiple sequence alignment