Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BSA171_RS08275 Genome accession   NZ_CP015611
Coordinates   1592913..1593248 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587913..1598248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS08225 (BSA171_08105) comGC 1588119..1588412 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  BSA171_RS08230 (BSA171_08110) comGD 1588405..1588851 (+) 447 WP_075611640.1 competence type IV pilus minor pilin ComGD -
  BSA171_RS08235 (BSA171_08115) comGE 1588835..1589152 (+) 318 WP_075611639.1 competence type IV pilus minor pilin ComGE -
  BSA171_RS08240 (BSA171_08120) comGF 1589061..1589591 (+) 531 WP_196770529.1 competence type IV pilus minor pilin ComGF -
  BSA171_RS08245 (BSA171_08125) - 1589588..1589971 (+) 384 WP_075611637.1 competence type IV pilus minor pilin ComGG -
  BSA171_RS08250 (BSA171_08130) - 1590031..1590225 (+) 195 WP_024718846.1 YqzE family protein -
  BSA171_RS08255 (BSA171_08135) - 1590258..1590536 (-) 279 WP_231120214.1 DUF3889 domain-containing protein -
  BSA171_RS08260 (BSA171_08140) tapA 1590836..1591363 (+) 528 WP_075611636.1 amyloid fiber anchoring/assembly protein TapA -
  BSA171_RS08265 (BSA171_08145) sipW 1591415..1591987 (+) 573 WP_047202287.1 signal peptidase I SipW -
  BSA171_RS08270 (BSA171_08150) tasA 1592045..1592845 (+) 801 WP_075611635.1 biofilm matrix protein TasA -
  BSA171_RS08275 (BSA171_08155) sinR 1592913..1593248 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  BSA171_RS08280 - 1593282..1593446 (-) 165 WP_075611634.1 anti-repressor SinI family protein -
  BSA171_RS08285 (BSA171_08160) - 1593629..1594426 (-) 798 WP_041086163.1 YqhG family protein -
  BSA171_RS08290 (BSA171_08165) - 1594441..1596111 (-) 1671 WP_041086161.1 DEAD/DEAH box helicase -
  BSA171_RS08295 (BSA171_08170) gcvT 1596663..1597760 (+) 1098 WP_075611633.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=181447 BSA171_RS08275 WP_024422969.1 1592913..1593248(-) (sinR) [Bacillus safensis strain U17-1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=181447 BSA171_RS08275 WP_024422969.1 1592913..1593248(-) (sinR) [Bacillus safensis strain U17-1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment