Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSA171_RS04905 Genome accession   NZ_CP015611
Coordinates   974659..975300 (+) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain U17-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 969659..980300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS04880 (BSA171_04815) - 969976..970332 (-) 357 WP_041088463.1 hypothetical protein -
  BSA171_RS04885 (BSA171_04820) degQ 970838..970978 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  BSA171_RS04890 (BSA171_04825) - 971130..972044 (+) 915 WP_075611855.1 polyprenyl synthetase family protein -
  BSA171_RS04895 comX 972041..972211 (+) 171 WP_075611854.1 competence pheromone ComX -
  BSA171_RS04900 (BSA171_04830) comP 972266..974578 (+) 2313 WP_075611853.1 ATP-binding protein Regulator
  BSA171_RS04905 (BSA171_04835) comA 974659..975300 (+) 642 WP_024423322.1 response regulator transcription factor Regulator
  BSA171_RS04910 (BSA171_04840) - 975324..975713 (+) 390 WP_041088470.1 hotdog fold thioesterase -
  BSA171_RS04915 (BSA171_04845) mnhG 975805..976179 (-) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  BSA171_RS04920 (BSA171_04850) - 976163..976444 (-) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  BSA171_RS04925 (BSA171_04855) - 976444..976923 (-) 480 WP_075611852.1 Na+/H+ antiporter subunit E -
  BSA171_RS04930 (BSA171_04860) - 976930..978408 (-) 1479 WP_073979081.1 Na+/H+ antiporter subunit D -
  BSA171_RS04935 (BSA171_04865) - 978401..978742 (-) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  BSA171_RS04940 (BSA171_04870) - 978742..979173 (-) 432 WP_041088475.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=181435 BSA171_RS04905 WP_024423322.1 974659..975300(+) (comA) [Bacillus safensis strain U17-1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=181435 BSA171_RS04905 WP_024423322.1 974659..975300(+) (comA) [Bacillus safensis strain U17-1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCTAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment