Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BSA145_RS20300 Genome accession   NZ_CP015607
Coordinates   3886388..3886723 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3881388..3891723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS20280 (BSA145_19850) gcvT 3881865..3882962 (-) 1098 WP_075623489.1 glycine cleavage system aminomethyltransferase GcvT -
  BSA145_RS20285 (BSA145_19855) - 3883524..3885194 (+) 1671 WP_075623490.1 DEAD/DEAH box helicase -
  BSA145_RS20290 (BSA145_19860) - 3885209..3886006 (+) 798 WP_075623491.1 YqhG family protein -
  BSA145_RS20295 - 3886190..3886354 (+) 165 WP_075623492.1 anti-repressor SinI family protein -
  BSA145_RS20300 (BSA145_19865) sinR 3886388..3886723 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  BSA145_RS20305 (BSA145_19870) tasA 3886791..3887591 (-) 801 WP_075623493.1 biofilm matrix protein TasA -
  BSA145_RS20310 (BSA145_19875) sipW 3887649..3888221 (-) 573 WP_075623494.1 signal peptidase I SipW -
  BSA145_RS20315 (BSA145_19880) tapA 3888274..3888801 (-) 528 WP_075623495.1 amyloid fiber anchoring/assembly protein TapA -
  BSA145_RS20320 (BSA145_19885) - 3889102..3889380 (+) 279 WP_226014770.1 DUF3889 domain-containing protein -
  BSA145_RS20325 (BSA145_19890) - 3889415..3889609 (-) 195 WP_075623734.1 YqzE family protein -
  BSA145_RS20330 (BSA145_19895) - 3889669..3890052 (-) 384 WP_075623496.1 competence type IV pilus minor pilin ComGG -
  BSA145_RS20335 (BSA145_19900) comGF 3890049..3890576 (-) 528 WP_257787572.1 competence type IV pilus minor pilin ComGF -
  BSA145_RS23120 (BSA145_19905) comGE 3890488..3890802 (-) 315 WP_041106865.1 competence type IV pilus minor pilin ComGE -
  BSA145_RS20345 (BSA145_19910) comGD 3890786..3891232 (-) 447 WP_075623497.1 competence type IV pilus minor pilin ComGD -
  BSA145_RS20350 (BSA145_19915) comGC 3891225..3891518 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=181353 BSA145_RS20300 WP_024422969.1 3886388..3886723(+) (sinR) [Bacillus safensis strain U14-5]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=181353 BSA145_RS20300 WP_024422969.1 3886388..3886723(+) (sinR) [Bacillus safensis strain U14-5]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment