Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BSA145_RS20110 Genome accession   NZ_CP015607
Coordinates   3852644..3854377 (-) Length   577 a.a.
NCBI ID   WP_034280267.1    Uniprot ID   -
Organism   Bacillus safensis strain U14-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3847644..3859377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA145_RS20090 (BSA145_19660) - 3848521..3849621 (-) 1101 WP_075623474.1 RapH N-terminal domain-containing protein -
  BSA145_RS20095 (BSA145_19665) - 3849609..3849806 (-) 198 WP_024422934.1 hypothetical protein -
  BSA145_RS20100 (BSA145_19670) spo0A 3850078..3850881 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  BSA145_RS20105 (BSA145_19675) spoIVB 3851167..3852444 (-) 1278 WP_041106823.1 SpoIVB peptidase -
  BSA145_RS20110 (BSA145_19680) recN 3852644..3854377 (-) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  BSA145_RS20115 (BSA145_19685) ahrC 3854411..3854860 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  BSA145_RS20120 (BSA145_19690) - 3855024..3855878 (-) 855 WP_075623475.1 TlyA family RNA methyltransferase -
  BSA145_RS20125 (BSA145_19695) dxs 3855875..3857776 (-) 1902 WP_075623476.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BSA145_RS20130 (BSA145_19700) - 3857927..3858817 (-) 891 WP_075623477.1 polyprenyl synthetase family protein -
  BSA145_RS20135 (BSA145_19705) - 3858807..3859067 (-) 261 WP_041106828.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=181352 BSA145_RS20110 WP_034280267.1 3852644..3854377(-) (recN) [Bacillus safensis strain U14-5]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=181352 BSA145_RS20110 WP_034280267.1 3852644..3854377(-) (recN) [Bacillus safensis strain U14-5]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCACCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAATAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGAGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAGATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGTACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAACTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759

Multiple sequence alignment