Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   A3K93_RS07070 Genome accession   NZ_CP015594
Coordinates   1485047..1485448 (-) Length   133 a.a.
NCBI ID   WP_227509859.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480047..1490448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS07040 (A3K93_07040) tadA 1480293..1480841 (-) 549 WP_067730198.1 tRNA adenosine(34) deaminase TadA -
  A3K93_RS07045 (A3K93_07045) - 1480848..1481969 (-) 1122 WP_067730199.1 enoyl-CoA hydratase/isomerase family protein -
  A3K93_RS07050 (A3K93_07050) ung 1481966..1482679 (-) 714 WP_067730201.1 uracil-DNA glycosylase -
  A3K93_RS07055 (A3K93_07055) - 1482732..1483328 (-) 597 WP_067730203.1 6-carboxytetrahydropterin synthase -
  A3K93_RS07060 (A3K93_07060) gspK 1483462..1484424 (-) 963 WP_067730204.1 type II secretion system minor pseudopilin GspK -
  A3K93_RS07065 (A3K93_07065) xcpW 1484421..1485050 (-) 630 WP_067730205.1 type II secretion system minor pseudopilin GspJ Machinery gene
  A3K93_RS07070 (A3K93_07070) xcpV 1485047..1485448 (-) 402 WP_227509859.1 type II secretion system minor pseudopilin GspI Machinery gene
  A3K93_RS07075 (A3K93_07075) - 1485555..1486109 (-) 555 WP_067730208.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  A3K93_RS07080 (A3K93_07080) - 1486113..1486727 (-) 615 WP_067730210.1 TetR/AcrR family transcriptional regulator -
  A3K93_RS07085 (A3K93_07085) - 1486773..1487546 (-) 774 WP_067730212.1 TatD family hydrolase -
  A3K93_RS07090 (A3K93_07090) - 1487574..1487915 (-) 342 WP_067730214.1 PilZ domain-containing protein -
  A3K93_RS07095 (A3K93_07095) - 1487931..1488917 (-) 987 WP_067730219.1 DNA polymerase III subunit delta' -
  A3K93_RS07100 (A3K93_07100) kdsB 1488931..1489692 (-) 762 WP_067730221.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14885.07 Da        Isoelectric Point: 8.0394

>NTDB_id=181243 A3K93_RS07070 WP_227509859.1 1485047..1485448(-) (xcpV) [Acinetobacter sp. NCu2D-2]
MKQRFTHRCSGFTLLEVMVALAIFATAAMTLTKVSMQYTQATSHAILRTKAQFVALNEAAQMDINREWLTGTSSEKKTSQ
GEMWQIDKKAEATISPNVQRIDIQVSLVNQETEQVEAGISSLVFFNQKVKDTP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=181243 A3K93_RS07070 WP_227509859.1 1485047..1485448(-) (xcpV) [Acinetobacter sp. NCu2D-2]
GTGAAACAGCGTTTTACTCATCGCTGCTCAGGATTTACCTTGTTGGAAGTAATGGTGGCGCTTGCAATATTTGCCACAGC
AGCCATGACCTTGACGAAAGTTTCCATGCAATACACCCAAGCAACCTCACATGCCATTTTAAGAACCAAAGCACAGTTTG
TCGCGTTAAATGAAGCGGCTCAGATGGATATTAACCGTGAGTGGTTAACTGGAACTTCATCTGAGAAAAAAACATCTCAG
GGTGAAATGTGGCAAATCGATAAAAAAGCCGAAGCCACCATAAGCCCAAATGTACAGCGAATTGATATTCAAGTCAGTTT
AGTCAATCAAGAAACAGAGCAGGTCGAAGCAGGCATCAGTAGTCTTGTGTTTTTTAACCAAAAGGTGAAAGACACACCAT
GA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Type II secretion system (T2SS), protein I (T2SSI)

(48-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

68.293

92.481

0.632

Multiple sequence alignment