Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3K93_RS00370 Genome accession   NZ_CP015594
Coordinates   86178..86753 (+) Length   191 a.a.
NCBI ID   WP_067727912.1    Uniprot ID   A0A172YL08
Organism   Acinetobacter sp. NCu2D-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 81178..91753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS14870 - 82930..83088 (+) 159 WP_157883244.1 hypothetical protein -
  A3K93_RS14875 - 83110..83280 (+) 171 WP_157883245.1 hypothetical protein -
  A3K93_RS00360 (A3K93_00360) - 83524..84606 (+) 1083 WP_067727910.1 DUF475 domain-containing protein -
  A3K93_RS00365 (A3K93_00365) - 84762..86126 (+) 1365 WP_067727911.1 MFS transporter -
  A3K93_RS00370 (A3K93_00370) ssb 86178..86753 (+) 576 WP_067727912.1 single-stranded DNA-binding protein Machinery gene
  A3K93_RS00375 (A3K93_00375) ahpC 86965..87528 (+) 564 WP_067727914.1 alkyl hydroperoxide reductase subunit C -
  A3K93_RS00380 (A3K93_00380) - 87587..88510 (-) 924 WP_067727916.1 LysR substrate-binding domain-containing protein -
  A3K93_RS00385 (A3K93_00385) - 89025..89252 (-) 228 Protein_78 transposase domain-containing protein -
  A3K93_RS00390 (A3K93_00390) ltrA 89357..91018 (-) 1662 WP_067731626.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20883.61 Da        Isoelectric Point: 6.4819

>NTDB_id=181228 A3K93_RS00370 WP_067727912.1 86178..86753(+) (ssb) [Acinetobacter sp. NCu2D-2]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRAQGEQSDNGGFGQPRFNNNQGGYGNNNNQGGYNNAPQQGGYNNAPANN
GYGNNNPGGFAPKAPAPVSAPAADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=181228 A3K93_RS00370 WP_067727912.1 86178..86753(+) (ssb) [Acinetobacter sp. NCu2D-2]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTGGGTAAAGACCCTGAGACAAAAACTTTTGCCAATGGTGGTTC
ACTCACTCAGTTCTCAATTGCAACAAGCGATTCTTGGACAGATAAAAGTACAGGTGAGCGTAAAGAACAAACTGAATGGC
ACCGTATTGTGTTGCATAACCGTTTAGGCGAAATTGCACAACAGTACCTACGCAAAGGCTCAAAAGTATATATCGAAGGT
TCATTGCGTACCCGTCAATGGACCGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGTGAACAGATGCAAAT
GTTAGATTCAAACCGTGCTCAAGGTGAACAGTCTGACAACGGCGGTTTCGGTCAACCGCGTTTTAATAATAACCAAGGTG
GTTATGGCAACAACAATAACCAAGGCGGTTATAACAATGCACCGCAGCAAGGTGGCTATAACAATGCTCCTGCGAACAAT
GGTTATGGCAATAACAACCCAGGTGGTTTTGCACCAAAAGCACCTGCACCAGTGTCAGCGCCTGCTGCAGATCTAGATGA
TGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YL08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.749

100

0.518
  ssb Vibrio cholerae strain A1552

43.367

100

0.445
  ssb Neisseria meningitidis MC58

39.683

98.953

0.393
  ssb Neisseria gonorrhoeae MS11

39.683

98.953

0.393

Multiple sequence alignment