Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CHL_RS03325 Genome accession   NZ_CP015576
Coordinates   596839..597213 (+) Length   124 a.a.
NCBI ID   WP_063997963.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. lawsonii CCUG 27631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591839..602213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHL_RS03305 (CHL_0667) - 592952..593764 (-) 813 WP_034962675.1 HDOD domain-containing protein -
  CHL_RS03310 (CHL_0668) ilvC 593914..594936 (+) 1023 WP_034962676.1 ketol-acid reductoisomerase -
  CHL_RS03315 (CHL_0669) - 594937..596085 (+) 1149 WP_063997961.1 divergent polysaccharide deacetylase family protein -
  CHL_RS03320 (CHL_0670) dprA 596069..596842 (+) 774 WP_063997962.1 DNA-processing protein DprA Machinery gene
  CHL_RS03325 (CHL_0671) dprB 596839..597213 (+) 375 WP_063997963.1 Holliday junction resolvase RuvX Machinery gene
  CHL_RS03330 (CHL_0672) - 597215..598084 (+) 870 WP_063997964.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHL_RS03335 (CHL_0673) - 598081..599244 (-) 1164 WP_063997965.1 hypothetical protein -
  CHL_RS03340 (CHL_0674) queA 599254..600285 (-) 1032 WP_063997966.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHL_RS03345 (CHL_0675) tatC 600269..601021 (-) 753 WP_059433782.1 twin-arginine translocase subunit TatC -
  CHL_RS03350 (CHL_0676) tatB 601021..601458 (-) 438 WP_063997967.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13750.17 Da        Isoelectric Point: 10.1510

>NTDB_id=181102 CHL_RS03325 WP_063997963.1 596839..597213(+) (dprB) [Campylobacter hyointestinalis subsp. lawsonii CCUG 27631]
MIVAIDVGLKRIGVAFAINKNLVLPSEPVLRKNRVQAANDTLKMLKEKNAKTLVVGLPKGGSSEDEMQRRIKHFISLVGF
DGEIIYQDEAYSSFEASALVKDKRDGKFDSIAAMIILKRYLGIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=181102 CHL_RS03325 WP_063997963.1 596839..597213(+) (dprB) [Campylobacter hyointestinalis subsp. lawsonii CCUG 27631]
ATGATAGTAGCAATAGATGTTGGCTTAAAAAGGATAGGCGTTGCTTTTGCTATAAATAAAAATTTAGTTTTACCAAGTGA
GCCAGTGCTTCGTAAAAACCGAGTTCAAGCAGCAAATGATACTCTAAAAATGCTAAAAGAAAAAAACGCCAAAACGCTTG
TAGTGGGGCTTCCAAAAGGCGGATCTAGCGAAGATGAAATGCAAAGAAGAATAAAGCATTTTATATCGCTTGTTGGATTT
GATGGGGAGATAATATATCAAGATGAAGCGTATTCGAGTTTTGAAGCAAGTGCTTTGGTAAAAGATAAAAGAGATGGTAA
ATTTGATAGTATAGCTGCGATGATAATACTAAAAAGATATTTAGGAATTTTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.923

100

0.492

Multiple sequence alignment