Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   BWR56_RS04690 Genome accession   NZ_CP019562
Coordinates   966439..970092 (+) Length   1217 a.a.
NCBI ID   WP_076984548.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 961439..975092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS04675 (BWR56_0925) - 962187..962648 (+) 462 WP_076984545.1 MarR family winged helix-turn-helix transcriptional regulator -
  BWR56_RS04680 (BWR56_0926) - 962641..963060 (+) 420 WP_076984546.1 EVE domain-containing protein -
  BWR56_RS04685 (BWR56_0927) rexB 963167..966442 (+) 3276 WP_076984547.1 ATP-dependent nuclease subunit B Machinery gene
  BWR56_RS04690 (BWR56_0928) rexA 966439..970092 (+) 3654 WP_076984548.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BWR56_RS04695 (BWR56_0929) - 970110..971288 (+) 1179 WP_076984549.1 hypothetical protein -
  BWR56_RS04700 - 971322..971678 (-) 357 WP_000560800.1 type II toxin-antitoxin system PemK/MazF family toxin -
  BWR56_RS04705 mazE 971662..971877 (-) 216 WP_049505811.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  BWR56_RS04710 (BWR56_0932) ylqF 972093..972944 (+) 852 WP_049505812.1 ribosome biogenesis GTPase YlqF -
  BWR56_RS04715 (BWR56_0933) - 972931..973710 (+) 780 WP_049505813.1 ribonuclease HII -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140180.50 Da        Isoelectric Point: 5.1239

>NTDB_id=180946 BWR56_RS04690 WP_076984548.1 966439..970092(+) (rexA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MKPISFLTEEEIKKLQEAEASSSKEQKKTAEQIQAIYTAGQNILISASAGSGKTFVMAERILDQLTRGVEISQLFISTFT
VKAATELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLILK
NEVFHQVFEAHYQGENKENFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSNPQKWLSNSFLKGFGEADFTSEKEKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVLLVLDEISSLNQESDSQAYQAVLARVVAISKEKNGRALANSSRKADL
KPLADAYNEERKSQFAKLGQLADQITILDYQERYHEETWGLAQTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILE
NFPQVRETYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIINEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKGDSGQEKEESDEDTKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKAEDKVQENLYEKLVNAQRQVTDQKELIHKDLAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELLTIHK
SKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDSNTRLQARNFQDWVWAISKVFAKDNLNFSYRFVGEDQLTR
EAIGELENKSPLQDSSQASNRQSETIKEALEMLKEVEVYNTLHRTAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSS
EKQISFDLPDFSTKKKVTGAEIGSATHELMQRIDLSQQPTLASLTETLKQVQTSLAVRDKINLSKILAFFDTPLGQEILA
NTGHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEDRIILFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=180946 BWR56_RS04690 WP_076984548.1 966439..970092(+) (rexA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTAAAAAATTGCAAGAAGCAGAAGCGAGTTCGAGCAAGGAACAGAA
GAAAACTGCCGAGCAAATCCAAGCCATTTATACTGCTGGGCAAAATATTCTGATCTCAGCGTCTGCTGGTTCAGGGAAAA
CCTTTGTCATGGCAGAACGTATTTTGGATCAATTAACTCGTGGTGTAGAAATCAGTCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACTGAACTCAAAGAACGTTTGGAGAAGAAAATTAGCCAACAAATCCAAGAAACCGATGATGTTGACCT
CAAACAACACTTGGGACGTCAGTTGGCAGATCTGCCAAACGCGGCCATCGGAACCATGGACTCCTTCACACAAAAATTCC
TAGGAAAACATGGCTATTTGATTGATATCGCACCAAATTTTCGTATTCTACAAAATGAAAGTGAACAGTTAATCCTCAAA
AACGAAGTTTTTCATCAGGTTTTTGAAGCCCATTACCAAGGTGAAAATAAAGAGAACTTTAGTCGCTTGGTCAAGAACTT
TGCTGGACGAGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTCCAATCCACTAGTAATC
CTCAAAAATGGCTGAGTAACTCTTTCCTCAAAGGATTTGGAGAAGCTGATTTTACTAGTGAAAAAGAAAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTTCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCCAAAGC
TGCCTATTTAGAAAATGTGCTGTTGGTTCTGGATGAAATTAGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CAGTGCTTGCTCGTGTTGTCGCCATCTCGAAAGAGAAAAATGGTCGGGCTCTTGCTAACTCTAGTCGAAAGGCTGATTTG
AAGCCACTTGCAGATGCTTATAACGAGGAGAGAAAATCCCAGTTTGCAAAACTTGGACAACTAGCAGACCAGATAACAAT
TCTCGACTATCAAGAGCGTTATCACGAAGAAACATGGGGACTTGCTCAGACTTTCCAAACCTTCATGAGCGACTTTGTAG
AAGCTTATCGTGAACGTAAACGCCAGGAAAATGCATTTGAATTCGCTGATATCAGTCATTACACCATTGAGATTTTAGAG
AATTTCCCACAAGTTCGCGAGACTTATCAAGAGAGATTTCATGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGTT
TCCGTCAGGCAGACCCGCAGATTATCAATGAAAAATTTCAACGCTATGCGCAAAATCCTCAAGAAGGAAAGCTGATTTTG
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTGCTGTCAGCAACCAATGATGTTTTTGGACGCCTTATGGACCAAGAGGT
CGGTGAAATCAACTATGACAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCTAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGGCGATAGTGGGCAAGAGAAAGAAGAAAGTGATGAAGACACGAAACTCACTGGGGAAATG
CGCCTTGTCATCAAGGAAATCTTAAAGCTACATCAAGAAAAAGGTGTGGCCTTCAAAGAAATTGCCCTTCTGACTTCCAG
TCGCAGTCGTAATGACCAGATTCTACTTGCCCTGTCTGAGTACGGGATACCTGTCAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCTTAGAAGTACAAGTCATGTTGGACACCCTTCGTGTCATCCACAATCCCCTGCAAGACTATGCCTTGGTT
GCCCTTATGAAGTCTCCTATGTTTAGTTTCGATGAGGACGAGTTGGCACGTTTATCTCTTCAGAAAGCAGAAGATAAAGT
ACAAGAGAATCTTTATGAGAAACTAGTTAATGCTCAAAGACAGGTAACTGATCAGAAAGAGTTAATTCACAAGGACCTAG
CTGAAAAACTCAATCAGTTCATGGATATTTTGGATTCTTGGCGCTTGTATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTATAATGACCGTTTTTATTATGACTATGTTGGAGCTTTGCCAAATGGCCCTGCTAGACAGGCCAATCTCTA
TGCCCTAGCGCTACGTGCTGACCAGTTTGAAAAGAGTAATTTTAAGGGATTGTCGCGTTTTATACGTATGATTGACCAAG
TCCTAGAAGCCCAGCACGATCTCGCAAGTGTAGCCGTCGCACCGCCTAAAGATGCTGTGGAACTCTTGACCATTCACAAG
AGCAAAGGACTGGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGACGT
CATTCTCAGCCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCTAGCCTGACCTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACAAGGGCTGAGAAAAAGCTCTATCTTGTTGGCAAGGGCTCTCGCGAAAAGCTAGA
AGCCAAGGAATACCCAGCAGCAAACAATGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGG
TCTGGGCTATCAGCAAAGTATTTGCCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCAGCTGACTAGA
GAAGCTATCGGAGAATTGGAAAACAAGAGCCCTCTCCAAGATAGCTCTCAAGCAAGCAACCGCCAGTCAGAAACCATCAA
AGAAGCTCTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCACAGCTATTGAGCTTCCTAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCGGTTATGGATATGGAAGGGGTAGAAATTACTAACCAAACTCAATCATCG
GAAAAGCAAATCAGCTTTGATTTACCTGATTTTTCAACTAAAAAAAAGGTAACTGGAGCAGAGATTGGTAGTGCCACTCA
TGAACTCATGCAGAGAATTGACCTCAGTCAGCAACCAACACTTGCTAGCCTGACAGAAACACTCAAACAAGTTCAAACTA
GTCTAGCTGTTAGAGACAAGATCAATCTTTCTAAAATCCTAGCTTTCTTTGACACACCACTTGGTCAGGAGATTCTCGCT
AATACCGGCCATCTCTACCGCGAGCAACCTTTTTCTATGCTCAAGCGGGACCAAAAAAGTCAGGAAGACTTTGTTGTTCG
TGGGATCTTGGACGGCTATCTACTTTACGAGGACAGAATTATTCTTTTCGACTATAAGACAGACCGTTATGATGAACCAA
GTCAACTCATAGACCGCTATCGTGGCCAGTTAGCCCTATACGGTGAGGCCTTATCACGAGCTTATTCGATAGAAAACATT
GAAAAATACTTGATTTTACTCGGTAAAGATGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.783

100

0.918

Multiple sequence alignment