Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BZY74_RS01705 Genome accession   NZ_CP019558
Coordinates   316704..317441 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain KSC207     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311704..322441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY74_RS01690 (BZY74_01745) clpC 312158..314731 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BZY74_RS01695 (BZY74_01750) yfiH 314861..315592 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  BZY74_RS01700 (BZY74_01755) rluD 315589..316569 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BZY74_RS01705 (BZY74_01760) comL 316704..317441 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BZY74_RS01715 (BZY74_01770) raiA 317712..318053 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BZY74_RS25600 pheL 318157..318204 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BZY74_RS01720 (BZY74_01775) pheA 318303..319463 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  BZY74_RS01725 (BZY74_01780) tyrA 319506..320627 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BZY74_RS01730 (BZY74_01785) aroF 320638..321708 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BZY74_RS01735 (BZY74_01790) yfiL 321918..322311 (+) 394 Protein_327 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=180738 BZY74_RS01705 WP_000197686.1 316704..317441(+) (comL) [Escherichia coli strain KSC207]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=180738 BZY74_RS01705 WP_000197686.1 316704..317441(+) (comL) [Escherichia coli strain KSC207]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376