Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A4211_RS04190 | Genome accession | NZ_CP015558 |
| Coordinates | 835519..835971 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain USDA-ARS-USMARC-60494 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 818031..834983 | 835519..835971 | flank | 536 |
Gene organization within MGE regions
Location: 818031..835971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4211_RS04070 (A4211_04040) | - | 818031..818741 (+) | 711 | WP_006248874.1 | hypothetical protein | - |
| A4211_RS04075 (A4211_04045) | - | 819280..820047 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| A4211_RS04080 (A4211_04050) | - | 819998..820366 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| A4211_RS04090 (A4211_04055) | - | 820548..821003 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| A4211_RS04095 (A4211_04060) | - | 821017..822564 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| A4211_RS04100 (A4211_04065) | - | 822654..822788 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| A4211_RS04110 (A4211_04075) | - | 823126..823644 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| A4211_RS04115 (A4211_04080) | tetR(H) | 823647..824270 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4211_RS04120 (A4211_04085) | aadB | 824457..824990 (+) | 534 | WP_000381802.1 | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | - |
| A4211_RS04125 (A4211_04090) | - | 825048..825916 (+) | 869 | Protein_778 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| A4211_RS04130 (A4211_04095) | - | 825916..826743 (+) | 828 | WP_001007673.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | - |
| A4211_RS04135 (A4211_04100) | - | 826834..827538 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| A4211_RS04140 (A4211_04105) | msr(E) | 827901..829376 (+) | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
| A4211_RS04145 (A4211_04110) | - | 829432..830316 (+) | 885 | WP_014325835.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
| A4211_RS04150 (A4211_04115) | - | 830400..831104 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| A4211_RS04160 | - | 831110..831355 (+) | 246 | WP_025329032.1 | hypothetical protein | - |
| A4211_RS04165 (A4211_04120) | tetR(H) | 831358..831981 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| A4211_RS04170 (A4211_04125) | tet(H) | 832073..833275 (+) | 1203 | WP_014325836.1 | tetracycline efflux MFS transporter Tet(H) | - |
| A4211_RS04175 (A4211_04130) | - | 833371..834681 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| A4211_RS04180 (A4211_04135) | - | 834681..834917 (-) | 237 | WP_230294061.1 | hypothetical protein | - |
| A4211_RS04185 (A4211_04140) | - | 835024..835212 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| A4211_RS04190 (A4211_04145) | ssb | 835519..835971 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=180713 A4211_RS04190 WP_012340854.1 835519..835971(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60494]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=180713 A4211_RS04190 WP_012340854.1 835519..835971(-) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60494]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |