Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6M16_RS03560 Genome accession   NZ_CP015557
Coordinates   701383..703185 (+) Length   600 a.a.
NCBI ID   WP_024395875.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 696383..708185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS03535 (A6M16_03540) - 696808..697401 (-) 594 WP_024395872.1 DUF1361 domain-containing protein -
  A6M16_RS03540 (A6M16_03545) metG 697557..699560 (+) 2004 WP_024395873.1 methionine--tRNA ligase -
  A6M16_RS03545 (A6M16_03550) coiA 699622..700575 (+) 954 WP_024395874.1 competence protein CoiA Machinery gene
  A6M16_RS03550 (A6M16_03555) - 700619..700984 (+) 366 WP_014637766.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A6M16_RS03555 (A6M16_03560) HI0659 700974..701273 (+) 300 WP_014637767.1 helix-turn-helix domain-containing protein Machinery gene
  A6M16_RS03560 (A6M16_03565) pepF 701383..703185 (+) 1803 WP_024395875.1 oligoendopeptidase F Regulator
  A6M16_RS03565 (A6M16_03570) - 703187..703630 (+) 444 WP_024395876.1 hypothetical protein -
  A6M16_RS03570 (A6M16_03575) - 703641..704189 (+) 549 WP_024395877.1 DUF6630 family protein -
  A6M16_RS03575 (A6M16_03580) - 704264..704983 (+) 720 WP_050573105.1 O-methyltransferase -
  A6M16_RS03580 (A6M16_03585) prsA 705045..706046 (+) 1002 WP_024385839.1 peptidylprolyl isomerase PrsA -
  A6M16_RS03585 (A6M16_03590) - 706409..706894 (+) 486 WP_024395879.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69206.29 Da        Isoelectric Point: 4.4898

>NTDB_id=180682 A6M16_RS03560 WP_024395875.1 701383..703185(+) (pepF) [Streptococcus suis strain DN13]
MSKQRYEIEEKYQWDLTTIFPTDDAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEIFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTTISYEDALK
KCQETLEIFGEDYSTIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRQT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEEAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=180682 A6M16_RS03560 WP_024395875.1 701383..703185(+) (pepF) [Streptococcus suis strain DN13]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACCACTATTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGATCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTGGCAGCCAAGGACCATGTCTTGTCACAAGAGGTGGAAGAAGTATTGGCGGCGACC
AGCGAAATTTTCGAATCACCAGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCCCGTTTACGGAAGTACGACTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTGGGGA
TTGATGATTTGAAAATGTACGATATGTACACACCATTGTCAGATTTCAGCACCACGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTACTATCGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGTTCAGGAGCATATTCAGGAGGTGCCTACGATACCAACGCTTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTCAGACG
CAGCCATACGTTTACGGGCATTATTCACTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTCTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGATAAGGAACGCTTTGCGATTCTTAACCATTACCTAGATGGTTTCCGTGGCACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAAGAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAATTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTGGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment