Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   A2I68_RS06350 Genome accession   NZ_CP015553
Coordinates   1240251..1240676 (-) Length   141 a.a.
NCBI ID   WP_235318543.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.1596     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235251..1245676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I68_RS06330 (A2I68_06195) - 1235722..1237677 (-) 1956 WP_046099270.1 AlwI family type II restriction endonuclease -
  A2I68_RS06335 - 1237683..1238669 (-) 987 WP_200894319.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  A2I68_RS06340 - 1238621..1239442 (-) 822 WP_200894318.1 DNA adenine methylase -
  A2I68_RS06345 - 1239412..1239786 (-) 375 WP_200894317.1 helix-turn-helix domain-containing protein -
  A2I68_RS06350 (A2I68_06205) comGA 1240251..1240676 (-) 426 WP_235318543.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  A2I68_RS06355 (A2I68_06210) - 1240747..1241370 (-) 624 WP_015900416.1 MBL fold metallo-hydrolase -
  A2I68_RS06360 (A2I68_06215) - 1241370..1241699 (-) 330 WP_015900417.1 MTH1187 family thiamine-binding protein -
  A2I68_RS06365 (A2I68_06220) - 1241699..1242685 (-) 987 WP_046099269.1 ROK family glucokinase -
  A2I68_RS06370 (A2I68_06225) - 1242685..1242885 (-) 201 WP_015900419.1 YqgQ family protein -
  A2I68_RS06375 (A2I68_06230) - 1242866..1244326 (-) 1461 WP_046099268.1 rhomboid family intramembrane serine protease -
  A2I68_RS06380 (A2I68_06235) - 1244343..1244885 (-) 543 WP_046099267.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16402.09 Da        Isoelectric Point: 8.7804

>NTDB_id=180631 A2I68_RS06350 WP_235318543.1 1240251..1240676(-) (comGA) [Staphylococcus carnosus strain TMW 2.1596]
MKRLLDTILTDAISKNVSDIHFIPIEKEVIIKFRIHDDLINYDNIEILTYLKLLTFMKFQAVLDVSNYHQAQSGQTTFKH
QKLYNLRVSTLPLSLGIESCVIRLSPQYFYQDTDRDGPKHFYHLMNKKQGLILFTGPTGVL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=180631 A2I68_RS06350 WP_235318543.1 1240251..1240676(-) (comGA) [Staphylococcus carnosus strain TMW 2.1596]
ATGAAAAGACTTTTAGATACAATTCTCACAGATGCAATTTCGAAAAATGTATCTGATATCCATTTTATTCCAATTGAAAA
AGAAGTTATAATCAAGTTCAGAATTCACGATGATTTAATTAATTATGACAATATCGAAATTCTGACTTATTTAAAGTTAC
TTACGTTTATGAAATTTCAAGCAGTGCTCGATGTATCTAATTATCATCAAGCACAAAGTGGTCAGACAACTTTCAAGCAT
CAAAAACTATATAATTTACGTGTTTCTACTTTACCGTTATCCTTAGGGATTGAGAGTTGTGTAATACGACTTTCACCCCA
GTATTTTTATCAAGATACCGATCGTGATGGTCCTAAACACTTCTATCATTTAATGAATAAAAAGCAAGGACTTATTTTAT
TCACGGGACCAACCGGGGTATTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

56.115

98.582

0.553
  comGA Staphylococcus aureus N315

56.115

98.582

0.553
  pilB Glaesserella parasuis strain SC1401

36.735

100

0.383

Multiple sequence alignment