Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   A2I66_RS00210 Genome accession   NZ_CP015535
Coordinates   39370..40998 (-) Length   542 a.a.
NCBI ID   WP_065865880.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.218     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34370..45998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I66_RS00160 (A2I66_00160) - 34400..34720 (+) 321 WP_065865873.1 metalloregulator ArsR/SmtB family transcription factor -
  A2I66_RS00165 (A2I66_00165) - 34810..35694 (+) 885 WP_065865874.1 permease -
  A2I66_RS00170 - 35708..35845 (+) 138 WP_107529391.1 hypothetical protein -
  A2I66_RS00175 (A2I66_00170) - 35979..36158 (-) 180 WP_065865875.1 hypothetical protein -
  A2I66_RS00180 - 36215..36427 (-) 213 WP_229347794.1 hypothetical protein -
  A2I66_RS00185 (A2I66_00175) - 36452..36991 (-) 540 WP_229347799.1 HTH domain-containing protein -
  A2I66_RS00190 (A2I66_00180) - 37161..37607 (-) 447 WP_065865876.1 JAB domain-containing protein -
  A2I66_RS00195 (A2I66_00185) - 37628..38134 (-) 507 WP_065865877.1 DUF1643 domain-containing protein -
  A2I66_RS00200 (A2I66_00190) - 38150..38461 (-) 312 WP_065865878.1 DUF960 family protein -
  A2I66_RS00205 (A2I66_00195) - 38557..38895 (-) 339 WP_065865879.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I66_RS00210 (A2I66_00200) ccrB 39370..40998 (-) 1629 WP_065865880.1 recombinase family protein Machinery gene
  A2I66_RS00215 (A2I66_00205) ccrA 41018..42367 (-) 1350 WP_065865881.1 recombinase family protein Machinery gene
  A2I66_RS00220 (A2I66_00210) - 42538..42801 (-) 264 WP_065865882.1 hypothetical protein -
  A2I66_RS00225 (A2I66_00215) - 42867..44654 (-) 1788 WP_065865883.1 DUF927 domain-containing protein -
  A2I66_RS00230 (A2I66_00220) - 44654..44923 (-) 270 WP_031838353.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62158.94 Da        Isoelectric Point: 9.7723

>NTDB_id=180493 A2I66_RS00210 WP_065865880.1 39370..40998(-) (ccrB) [Staphylococcus carnosus strain TMW 2.218]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPALQRLLKDANEGHIDSVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
IPLGYSNIPDNKKELMINQHEANIVNYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHSPIIGKDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPSYDTKQIAVLLQRIFQNIESMDKSQLK
TLYLTVIDRIDIRKDGSHKKQFFVTLKLNNEIIKQLFNNTSLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=180493 A2I66_RS00210 WP_065865880.1 39370..40998(-) (ccrB) [Staphylococcus carnosus strain TMW 2.218]
ATGCAACAACTTAAACAAAAACGTGTCGGTATCTATGTCCGTGTATCAACAGAAATGCAAAGTGCTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGCACTACAACGTTTGTTAAAAGATGCGAATGAAGGTCATATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAATACATCAGACTTACTGAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAGCTCATGTTACAAATTCTAGCAAGTTTCTCCG
AATTTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAGCATCAAAGAGCCTTAGAAGGCTATTATCAAGGCAAT
ATTCCTTTAGGATATTCTAATATACCTGATAATAAAAAAGAATTAATGATTAACCAACATGAAGCCAATATTGTGAACTA
TATCTTTGAATCATACGCCAAAGGTCATGGATATCGTAAAATTGCCAATGCACTCAACCATAAAGGATATGTAACTAAGA
AAGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAATCCATTCTATATTGGTAAAATCCAATTCGCGAAA
TACAAAGATTGGAATGATAAACGTCGTAAAGGCTTGAATGATAAGCCAGTAATCGCTGAAGGTAAGCACTCCCCTATTAT
TGGCAAAGACTTATGGGATAAAGTCCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAA
ATCTGTTAACTGGAATAATTTTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGAC
GGTACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACGATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGACATTACGAATCAAATTAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTACGATACGAAACAAATCGCTGTCCTATTACAACGAATCTTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
ACTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGATGGGAGTCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACCTCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.21

100

0.832

Multiple sequence alignment