Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   A2I65_RS00180 Genome accession   NZ_CP015532
Coordinates   42434..44062 (-) Length   542 a.a.
NCBI ID   WP_002506257.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 37434..49062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS00150 (A2I65_00150) - 38605..38808 (-) 204 WP_011302053.1 hypothetical protein -
  A2I65_RS00155 - 39029..39115 (-) 87 Protein_28 DNA repair protein RadC -
  A2I65_RS00160 (A2I65_00155) - 39135..39641 (-) 507 WP_253720314.1 DUF1643 domain-containing protein -
  A2I65_RS00165 (A2I65_00160) - 39657..39968 (-) 312 WP_002506254.1 DUF960 family protein -
  A2I65_RS00170 (A2I65_00165) - 40055..40405 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  A2I65_RS00175 (A2I65_00170) - 40967..41896 (-) 930 WP_002506256.1 2-dehydropantoate 2-reductase -
  A2I65_RS00180 (A2I65_00175) ccrB 42434..44062 (-) 1629 WP_002506257.1 recombinase family protein Machinery gene
  A2I65_RS00185 (A2I65_00180) ccrA 44084..45433 (-) 1350 WP_204107989.1 recombinase family protein Machinery gene
  A2I65_RS00190 (A2I65_00185) - 45625..45900 (-) 276 WP_002506259.1 hypothetical protein -
  A2I65_RS00195 (A2I65_00190) - 45969..47762 (-) 1794 WP_002506260.1 DUF927 domain-containing protein -
  A2I65_RS00200 (A2I65_00195) - 47782..48012 (-) 231 WP_002506261.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62679.51 Da        Isoelectric Point: 9.6318

>NTDB_id=180420 A2I65_RS00180 WP_002506257.1 42434..44062(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDTPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAGLNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKATIHQYETQLNDITNQMNQLKHQQNQEKTSYDTKQIAALLRRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPKTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=180420 A2I65_RS00180 WP_002506257.1 42434..44062(-) (ccrB) [Staphylococcus carnosus strain TMW 2.212]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGATTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAGGATTTGCATAAACAGAACGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATTAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGACGTAAAGGTCTCAATGATACTCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAGGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGGACTCAATCATGATATTGCCTATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGATAATCCAGACTTAACATCTGCATTGAAAGCAACTAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAACCAAGAAAAAACAT
CTTACGATACGAAACAAATCGCTGCCCTATTACGACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTAAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.347

100

0.863

Multiple sequence alignment