Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A4W74_RS06045 Genome accession   NZ_CP015494
Coordinates   1183027..1183698 (-) Length   223 a.a.
NCBI ID   WP_253733400.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.1390     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178027..1188698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W74_RS06015 (A4W74_05985) rpsO 1178342..1178611 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W74_RS06020 (A4W74_05990) rpsT 1178888..1179142 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W74_RS06025 (A4W74_05995) holA 1179197..1180225 (-) 1029 WP_253733399.1 DNA polymerase III subunit delta -
  A4W74_RS06030 comEC 1180226..1181128 (-) 903 WP_054644305.1 MBL fold metallo-hydrolase Machinery gene
  A4W74_RS06035 - 1181177..1182339 (-) 1163 Protein_1176 ComEC/Rec2 family competence protein -
  A4W74_RS06040 (A4W74_06005) - 1182480..1182968 (-) 489 WP_111447701.1 ComE operon protein 2 -
  A4W74_RS06045 (A4W74_06010) comEA 1183027..1183698 (-) 672 WP_253733400.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W74_RS06050 (A4W74_06015) - 1183775..1184821 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  A4W74_RS06055 (A4W74_06020) coaD 1184823..1185317 (-) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  A4W74_RS06060 (A4W74_06025) rsmD 1185329..1185883 (-) 555 WP_065825726.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W74_RS06065 (A4W74_06030) - 1185889..1186179 (-) 291 WP_004270748.1 YlbG family protein -
  A4W74_RS06070 (A4W74_06035) - 1186199..1187287 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -
  A4W74_RS06075 (A4W74_06040) - 1187300..1188487 (-) 1188 WP_004270744.1 putative peptidoglycan glycosyltransferase FtsW -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24879.53 Da        Isoelectric Point: 9.9048

>NTDB_id=180056 A4W74_RS06045 WP_253733400.1 1183027..1183698(-) (comEA) [Latilactobacillus curvatus strain TMW 1.1390]
MWRDYWQRYRRFWWVPCLVIILLSGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=180056 A4W74_RS06045 WP_253733400.1 1183027..1183698(-) (comEA) [Latilactobacillus curvatus strain TMW 1.1390]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTAGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATCAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGCAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-115)

Helix-hairpin-helix motif (HHH_3)

(160-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.53

100

0.677
  comEA Lactococcus lactis subsp. cremoris KW2

36.283

100

0.368

Multiple sequence alignment