Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A4W73_RS05965 Genome accession   NZ_CP015493
Coordinates   1169402..1170073 (-) Length   223 a.a.
NCBI ID   WP_076789559.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.1381     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164402..1175073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W73_RS05940 (A4W73_05955) rpsO 1164716..1164985 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W73_RS05945 (A4W73_05960) rpsT 1165262..1165516 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W73_RS05950 (A4W73_05965) holA 1165571..1166599 (-) 1029 WP_076789564.1 DNA polymerase III subunit delta -
  A4W73_RS05955 (A4W73_05970) comEC 1166600..1168714 (-) 2115 WP_241782066.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W73_RS05960 (A4W73_05975) - 1168855..1169343 (-) 489 WP_004270740.1 ComE operon protein 2 -
  A4W73_RS05965 (A4W73_05980) comEA 1169402..1170073 (-) 672 WP_076789559.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W73_RS05970 (A4W73_05985) - 1170150..1171196 (-) 1047 WP_081394510.1 SepM family pheromone-processing serine protease -
  A4W73_RS05975 (A4W73_05990) coaD 1171198..1171692 (-) 495 WP_076789554.1 pantetheine-phosphate adenylyltransferase -
  A4W73_RS05980 (A4W73_05995) rsmD 1171704..1172258 (-) 555 WP_076789552.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W73_RS05985 (A4W73_06000) - 1172264..1172554 (-) 291 WP_004270748.1 YlbG family protein -
  A4W73_RS05990 (A4W73_06005) - 1172574..1173662 (-) 1089 WP_076789549.1 CAP-associated domain-containing protein -
  A4W73_RS05995 (A4W73_06010) - 1173675..1174862 (-) 1188 WP_076789547.1 putative peptidoglycan glycosyltransferase FtsW -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24925.62 Da        Isoelectric Point: 9.9048

>NTDB_id=180024 A4W73_RS05965 WP_076789559.1 1169402..1170073(-) (comEA) [Latilactobacillus curvatus strain TMW 1.1381]
MWRDYWQRYRRFWWVPCLVMILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAVTDNQAGASPISTDA
KINLNQADTTQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=180024 A4W73_RS05965 WP_076789559.1 1169402..1170073(-) (comEA) [Latilactobacillus curvatus strain TMW 1.1381]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATGATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATCAAAGGTGCCGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTCATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGTGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACCGATGCT
AAAATCAACCTAAACCAAGCGGATACGACACAATTACAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-115)

Helix-hairpin-helix motif (HHH_3)

(160-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.53

100

0.677
  comEA Lactococcus lactis subsp. cremoris KW2

36.283

100

0.368

Multiple sequence alignment