Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W73_RS05955 Genome accession   NZ_CP015493
Coordinates   1166600..1168714 (-) Length   704 a.a.
NCBI ID   WP_241782066.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain TMW 1.1381     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161600..1173714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W73_RS05930 (A4W73_05945) - 1161768..1162712 (-) 945 WP_076789566.1 hypothetical protein -
  A4W73_RS05935 (A4W73_05950) - 1162795..1164513 (-) 1719 WP_056966011.1 ribonuclease J -
  A4W73_RS05940 (A4W73_05955) rpsO 1164716..1164985 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  A4W73_RS05945 (A4W73_05960) rpsT 1165262..1165516 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  A4W73_RS05950 (A4W73_05965) holA 1165571..1166599 (-) 1029 WP_076789564.1 DNA polymerase III subunit delta -
  A4W73_RS05955 (A4W73_05970) comEC 1166600..1168714 (-) 2115 WP_241782066.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W73_RS05960 (A4W73_05975) - 1168855..1169343 (-) 489 WP_004270740.1 ComE operon protein 2 -
  A4W73_RS05965 (A4W73_05980) comEA 1169402..1170073 (-) 672 WP_076789559.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W73_RS05970 (A4W73_05985) - 1170150..1171196 (-) 1047 WP_081394510.1 SepM family pheromone-processing serine protease -
  A4W73_RS05975 (A4W73_05990) coaD 1171198..1171692 (-) 495 WP_076789554.1 pantetheine-phosphate adenylyltransferase -
  A4W73_RS05980 (A4W73_05995) rsmD 1171704..1172258 (-) 555 WP_076789552.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W73_RS05985 (A4W73_06000) - 1172264..1172554 (-) 291 WP_004270748.1 YlbG family protein -
  A4W73_RS05990 (A4W73_06005) - 1172574..1173662 (-) 1089 WP_076789549.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79879.26 Da        Isoelectric Point: 9.3224

>NTDB_id=180022 A4W73_RS05955 WP_241782066.1 1166600..1168714(-) (comEC) [Latilactobacillus curvatus strain TMW 1.1381]
MVSGLVLCLGGCRFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFELIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=180022 A4W73_RS05955 WP_241782066.1 1166600..1168714(-) (comEC) [Latilactobacillus curvatus strain TMW 1.1381]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCAGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGAATTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCACCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.942

100

0.632

Multiple sequence alignment