Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | A4W82_RS02765 | Genome accession | NZ_CP015487 |
| Coordinates | 554502..554930 (+) | Length | 142 a.a. |
| NCBI ID | WP_151384770.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.46 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 549502..559930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W82_RS02750 (A4W82_02715) | - | 551080..552168 (+) | 1089 | WP_035144637.1 | MraY family glycosyltransferase | - |
| A4W82_RS02755 (A4W82_02720) | - | 552195..552860 (-) | 666 | WP_025016329.1 | YigZ family protein | - |
| A4W82_RS02760 (A4W82_02725) | comFA | 552922..554259 (+) | 1338 | WP_052039239.1 | DEAD/DEAH box helicase | Machinery gene |
| A4W82_RS02765 | comFC | 554502..554930 (+) | 429 | WP_151384770.1 | ComF family protein | Machinery gene |
| A4W82_RS02770 (A4W82_02735) | raiA | 555057..555602 (+) | 546 | WP_011374202.1 | ribosome-associated translation inhibitor RaiA | - |
| A4W82_RS02775 (A4W82_02740) | secA | 555851..558214 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| A4W82_RS02780 (A4W82_02745) | prfB | 558284..559400 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16619.07 Da Isoelectric Point: 10.2048
>NTDB_id=179979 A4W82_RS02765 WP_151384770.1 554502..554930(+) (comFC) [Latilactobacillus sakei strain TMW 1.46]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
Nucleotide
Download Length: 429 bp
>NTDB_id=179979 A4W82_RS02765 WP_151384770.1 554502..554930(+) (comFC) [Latilactobacillus sakei strain TMW 1.46]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
97.183 |
100 |
0.972 |
| comFC | Lactococcus lactis subsp. cremoris KW2 |
36.62 |
100 |
0.366 |