Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWP24_RS15690 Genome accession   NZ_CP019293
Coordinates   3310524..3311198 (-) Length   224 a.a.
NCBI ID   WP_038890943.1    Uniprot ID   -
Organism   Vibrio campbellii strain LMB29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3305524..3316198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS15655 (BWP24_15695) coaD 3306403..3306888 (+) 486 WP_045456121.1 pantetheine-phosphate adenylyltransferase -
  BWP24_RS15660 (BWP24_15700) - 3306885..3307832 (+) 948 WP_077201174.1 glycosyl transferase family 90 -
  BWP24_RS15665 (BWP24_15705) - 3307825..3308196 (+) 372 WP_045456115.1 diacylglycerol kinase -
  BWP24_RS15670 (BWP24_15710) mutM 3308233..3309042 (-) 810 WP_077201175.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BWP24_RS15675 (BWP24_15715) - 3309146..3309622 (-) 477 WP_045420047.1 hypothetical protein -
  BWP24_RS15680 (BWP24_15720) rpmG 3309800..3309970 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  BWP24_RS15685 (BWP24_15725) rpmB 3309984..3310220 (-) 237 WP_005384783.1 50S ribosomal protein L28 -
  BWP24_RS15690 (BWP24_15730) radC 3310524..3311198 (-) 675 WP_038890943.1 DNA repair protein RadC Machinery gene
  BWP24_RS15695 (BWP24_15735) - 3311312..3312985 (-) 1674 WP_077201176.1 methyl-accepting chemotaxis protein -
  BWP24_RS15700 (BWP24_15740) coaBC 3313193..3314392 (+) 1200 WP_077201177.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BWP24_RS15705 (BWP24_15745) slmA 3314553..3315143 (+) 591 WP_005434407.1 nucleoid occlusion factor SlmA -
  BWP24_RS15710 (BWP24_15750) - 3315149..3316099 (+) 951 WP_077201178.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25324.07 Da        Isoelectric Point: 6.8490

>NTDB_id=179873 BWP24_RS15690 WP_038890943.1 3310524..3311198(-) (radC) [Vibrio campbellii strain LMB29]
MTLKTLPNESMPREKLLNRGPQALSDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEKEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=179873 BWP24_RS15690 WP_038890943.1 3310524..3311198(-) (radC) [Vibrio campbellii strain LMB29]
ATGACACTGAAAACCTTGCCCAACGAGTCCATGCCAAGAGAGAAATTGCTTAACCGCGGACCACAAGCGTTGTCGGATGC
CGAATTACTGGCTATTTTTCTGCGCACTGGAACGCAAGGTATGAACGTCATCGAATTAGCCGACTTTCTGATCCAAGACT
TTGGATCGCTTCGCCAGTTGTTTTCTGCTTCAGAGAAAGAGTTTTGCCAACATAAAGGGTTAGGGCAAGCGAAATACGTG
CAGTTACAAGCCGTTTTGGAAATGACGCAACGCTATTTAGCCGAGACATTAAAGCGTGGTGATGCGTTAACCAGCCCAGA
ACAAACCAAACTTTATCTTTCTTCTATATTAAGAGACCGACAAAGAGAGGCTTTTTACATTCTTTTCTTAGATAACCAAC
ATCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACACTCGATGCTGCATCGGTTTATCCGAGAGAAGTCGTCAAACGC
GCCTTGCACCACAACGCCGCTGCATTGATTTTGGCTCACAATCACCCGTCAGGTGTGGCGGAACCTAGCCAAGCAGATAG
AAGGATTACCCGGCGTTTAATCGACGCTTTAGCGCTGGTGGATATTCGAATTTTGGACCATTTCGTTATCGGAGATGGGG
AAAGCGTCTCTTTTGCCGAAAGAGGTTGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

52.535

96.875

0.509
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.384

Multiple sequence alignment