Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BWP24_RS14050 Genome accession   NZ_CP019293
Coordinates   2955985..2956713 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii strain LMB29     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2950985..2961713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS14035 (BWP24_14075) clpC 2951421..2953994 (-) 2574 WP_077201091.1 ATP-dependent chaperone ClpB Regulator
  BWP24_RS14040 (BWP24_14080) pgeF 2954141..2954869 (-) 729 WP_077201092.1 peptidoglycan editing factor PgeF -
  BWP24_RS14045 (BWP24_14085) rluD 2954871..2955848 (-) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BWP24_RS14050 (BWP24_14090) comL 2955985..2956713 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  BWP24_RS14055 (BWP24_14095) - 2956856..2958325 (+) 1470 WP_045456505.1 lytic transglycosylase F -
  BWP24_RS14060 (BWP24_14100) raiA 2958702..2959028 (+) 327 WP_005425319.1 ribosome-associated translation inhibitor RaiA -
  BWP24_RS14065 (BWP24_14105) pheA 2959272..2960450 (+) 1179 WP_005533293.1 prephenate dehydratase -
  BWP24_RS14070 (BWP24_14110) yjjX 2960493..2961026 (+) 534 WP_038889003.1 inosine/xanthosine triphosphatase -
  BWP24_RS14075 (BWP24_14115) trpR 2961142..2961444 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=179869 BWP24_RS14050 WP_005425318.1 2955985..2956713(+) (comL) [Vibrio campbellii strain LMB29]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=179869 BWP24_RS14050 WP_005425318.1 2955985..2956713(+) (comL) [Vibrio campbellii strain LMB29]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAACTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCAACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGATCGTAACTTCATGCATGACTTGTTCAATGTTGATCGTAGTGACCGTG
ATCCGGAGCCAGTGAAGAAAGCATTTGATGACTTCAAAAAACTGCTAGAGCGTTACCCAAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAAAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTGCAAAAAGCGTTTCCTGATACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388